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MLST allelic profiles and sequences

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The information in this table is available in XML format for automated parsing.

Database Data Retrieved
Achromobacter spp. 469 profiles 2019-10-15
nusA; rpoB; eno; gltB; lepA; nuoL; nrdA
Acinetobacter baumannii#1 2013 profiles 2019-10-15
Oxf_gltA; Oxf_gyrB; Oxf_gdhB; Oxf_recA; Oxf_cpn60; Oxf_gpi; Oxf_rpoD
Acinetobacter baumannii#2 1347 profiles 2019-10-15
Pas_cpn60; Pas_fusA; Pas_gltA; Pas_pyrG; Pas_recA; Pas_rplB; Pas_rpoB
Aeromonas spp. 646 profiles 2019-10-15
gyrB; groL; gltA; metG; ppsA; recA
Anaplasma phagocytophilum 179 profiles 2019-10-15
pheS; glyA; fumC; mdh; sucA; dnaN; atpA
Arcobacter spp. 831 profiles 2019-10-15
aspA; atpA; glnA; gltA; glyA; pgm; tkt
Aspergillus fumigatus 48 profiles 2019-10-15
ANX4; BGT1; CAT1; LIP; MAT1_2; SODB; ZRF2
Bacillus cereus 2481 profiles 2019-10-15
glp; gmk; ilv; pta; pur; pyc; tpi
Bacillus licheniformis 47 profiles 2019-10-15
adk; ccpA; recF; rpoB; spo0A; sucC
Bacillus subtilis 174 profiles 2019-10-15
glpF; ilvD; pta; purH; pycA; rpoD; tpiA
Bartonella bacilliformis 14 profiles 2019-10-15
ftsZ; flaA; ribC; rnpB; rpoB; bvrR; groEL
Bartonella henselae 36 profiles 2019-10-15
16S; batR; ftsZ; gltA; groEL; nlpD; ribC; rpoB
Bartonella washoensis 21 profiles 2019-10-15
16S; ftsZ; gltA; groEL; ribC; rpoB
Bordetella spp. 87 profiles 2019-10-15
adk; fumC; glyA; tyrB; icd; pepA; pgm
Borrelia spp. 927 profiles 2019-10-15
clpA; clpX; nifS; pepX; pyrG; recG; rplB; uvrA
Brachyspira hampsonii 20 profiles 2019-10-15
Bha_adh; Bha_est; Bha_gdh; Bha_glpK; Bha_pgm; Bha_thi
Brachyspira hyodysenteriae 256 profiles 2019-10-15
Bhy_adh; Bhy_alp; Bhy_est; Bhy_gdh; Bhy_glpK; Bhy_pgm; Bhy_thi
Brachyspira intermedia 83 profiles 2019-10-15
Bin_adh; Bin_alp; Bin_est; Bin_gdh; Bin_glpK; Bin_pgm; Bin_thi
Brachyspira pilosicoli 94 profiles 2019-10-15
Bpi_adh; Bpi_alp; Bpi_est; Bpi_gdh; Bpi_glpK; Bpi_pgm; Bpi_thi
Brachyspira spp. 36 profiles 2019-10-15
Bra_adh; Bra_alp; Bra_est; Bra_gdh; Bra_glp; Bra_pgm; Bra_thi
Brucella spp. 96 profiles 2019-10-15
gap; aroA; glk; dnaK; gyrB; trpE; cobQ; int_hyp; omp25
Burkholderia cepacia complex 1691 profiles 2019-10-15
atpD; gltB; gyrB; recA; lepA; phaC; trpB
Burkholderia pseudomallei 1746 profiles 2019-10-15
ace; gltB; gmhD; lepA; lipA; narK; ndh
Campylobacter concisus/curvus 130 profiles 2019-10-15
Cco_aspA; Cco_atpA; Cco_glnA; Cco_gltA; Cco_glyA; Cco_ilvD; Cco_pgm
Campylobacter fetus 69 profiles 2019-10-15
Cfe_aspA; Cfe_glnA; Cfe_gltA; Cfe_glyA; Cfe_pgm; Cfe_tkt; Cfe_uncA
Campylobacter helveticus 9 profiles 2019-10-15
Che_aspA; Che_atpA; Che_glnA; Che_gltA; Che_glyA; Che_pgm; Che_tkt
Campylobacter hyointestinalis 134 profiles 2019-10-15
Chy_aspA; Chy_atpA; Chy_glnA; Chy_gltA; Chy_glyA; Chy_pgm; Chy_tkt
Campylobacter insulaenigrae 43 profiles 2019-10-15
Cin_aspA; Cin_atpA; Cin_glnA; Cin_glyA; Cin_pgi; Cin_pgm; Cin_tkt
Campylobacter jejuni 10060 profiles 2019-10-15
aspA; glnA; gltA; glyA; pgm; tkt; uncA
Campylobacter lanienae 172 profiles 2019-10-15
Cln_aspA; Cln_atpA; Cln_glnA; Cln_gltA; Cln_glyA; Cln_pgm; Cln_tkt
Campylobacter lari 161 profiles 2019-10-15
Cla_adk; Cla_atpA; Cla_glnA; Cla_glyA; Cla_pgi; Cla_pgm; Cla_tkt
Campylobacter sputorum 16 profiles 2019-10-15
Csp_aspA; Csp_atpA; Csp_glnA; Csp_gltA; Csp_glyA; Csp_pgm; Csp_tkt
Campylobacter upsaliensis 204 profiles 2019-10-15
Cup_adk; Cup_aspA; Cup_atpA; Cup_glnA; Cup_glyA; Cup_pgi; Cup_tkt
Candida albicans 3566 profiles 2019-10-15
AAT1a; ACC1; ADP1; MPIb; SYA1; VPS13; ZWF1b
Candida glabrata 168 profiles 2019-10-15
FKS; LEU2; NMT1; TRP1; UGP1; URA3
Candida krusei 188 profiles 2019-10-15
HIS3; LEU2; NMT1; TRP1; ADE2; LYS2D
Candida tropicalis 871 profiles 2019-10-15
ICL1; MDR1; SAPT2; SAPT4; XYR1; ZWF1a
Candidatus Liberibacter solanacearum 10 profiles 2019-10-15
adk; atpA; fbpA; ftsZ; glyA; groEL; gyrB
Carnobacterium maltaromaticum 56 profiles 2019-10-15
dapE; ddlA; glpQ; ilvE; leuS; pyc; pyrE
Chlamydiales spp. 275 profiles 2019-10-15
gatA; oppA; hflX; gidA; enoA; hemN; fumC
Citrobacter freundii 521 profiles 2019-10-15
aspC; clpX; fadD; mdh; arcA; dnaG; lysP
Clonorchis sinensis 254 profiles 2019-10-15
Actin; Cox1; Cox3; Ef_1a; Its1; Nad4; Nad5; Tubulin
Clostridioides difficile 630 profiles 2019-10-15
adk; atpA; dxr; glyA; recA; sodA; tpi
Clostridium botulinum 112 profiles 2019-10-15
aroE; mdh; aceK; oppB; rpoB; recA; hsp
Clostridium septicum 8 profiles 2019-10-15
ddl; dnaK; glpK; groEL; gyrA; recA; tpi
Corynebacterium diphtheriae 632 profiles 2019-10-15
atpA; dnaE; dnaK; fusA; leuA; odhA; rpoB
Cronobacter spp. 697 profiles 2019-10-15
atpD; fusA; glnS; gltB; gyrB; infB; pps
Dichelobacter nodosus 115 profiles 2019-10-15
dcd; dtdA; folK; recR; rlmH; rplI; tsaE
Edwardsiella spp. 18 profiles 2019-10-15
adk; atpD; dnaJ; gapA; glnA; hsp60; phoR; pyrG; rpoA; tuf
Enterobacter cloacae 1320 profiles 2019-10-15
dnaA; fusA; gyrB; leuS; pyrG; rplB; rpoB
Enterococcus faecalis 938 profiles 2019-10-15
gdh; gyd; pstS; gki; aroE; xpt; yqiL
Enterococcus faecium 1639 profiles 2019-10-15
atpA; ddl; gdh; purK; gyd; pstS; adk
Escherichia coli#1 9148 profiles 2019-10-15
adk; fumC; gyrB; icd; mdh; purA; recA
Escherichia coli#2 966 profiles 2019-10-15
dinB; icdA; pabB; polB; putP; trpA; trpB; uidA
Flavobacterium psychrophilum 194 profiles 2019-10-15
atpA; dnaK; fumC; gyrB; murG; trpB; tuf
Gallibacterium anatis 81 profiles 2019-10-15
adk; atpD; fumC; gyrB; infB; mdh; recN; thdF
Haemophilus influenzae 2197 profiles 2019-10-15
adk; atpG; frdB; fucK; mdh; pgi; recA
Haemophilus parasuis 397 profiles 2019-10-15
atpD; infB; mdh; rpoB; 6pgd; g3pd; frdB
Helicobacter cinaedi 19 profiles 2019-10-15
23S_rRNA; ppa; aspA; aroE; atpA; tkt; cdtB
Helicobacter pylori 3495 profiles 2019-10-15
atpA; efp; mutY; ppa; trpC; ureI; yphC
Helicobacter suis 138 profiles 2019-10-15
atpA; efp; mutY; ppa; trpC; ureAB; yphC
Kingella kingae 70 profiles 2019-10-15
abcZ; adk; aroE; cpn60; gdh; recA
Klebsiella aerogenes 198 profiles 2019-10-15
dnaA; fusA; gyrB; leuS; pryG; rplB; rpoB
Klebsiella oxytoca 259 profiles 2019-10-15
gapA; infB; mdh; pgi; phoE; rpoB; tonB
Klebsiella pneumoniae 4507 profiles 2019-10-15
gapA; infB; mdh; pgi; phoE; rpoB; tonB
Kudoa septempunctata 3 profiles 2019-10-15
cox1; rnl
Lactobacillus salivarius 25 profiles 2019-10-15
pstB; rpsB; nrdB; rpoA; parB
Leptospira spp. 297 profiles 2019-10-15
glmU_1; pntA_1; sucA_1; tpiA_1; pfkB_1; mreA_1; caiB_1
Leptospira spp.#2 273 profiles 2019-10-15
adk_2; glmU_2; icdA_2; lipL32_2; lipL41_2; mreA_2; pntA_2
Leptospira spp.#3 153 profiles 2019-10-15
adk_3; icdA_3; lipL41_3; rrs2_3; secY_3; lipL32_3
Listeria monocytogenes 1591 profiles 2019-10-15
abcZ; bglA; cat; dapE; dat; ldh; lhkA
Macrococcus canis 82 profiles 2019-10-15
ack; cpn60; fdh; pta; purA; sar; tuf
Macrococcus caseolyticus 66 profiles 2019-10-15
ack; cpn60; fdh; pta; purA; sar; tuf
Mannheimia haemolytica 51 profiles 2019-10-15
adk; aroE; deoD; gapDH; gnd; mdh; zwf
Melissococcus plutonius 35 profiles 2019-10-15
argE; galK; gbpB; purR
Moraxella catarrhalis 772 profiles 2019-10-15
abcZ; adk; efp; fumC; glyBeta; mutY; ppa; trpE
Mycobacteria spp. 839 profiles 2019-10-15
S14Z; L35; S19; L19; S12; S8; L16; S7
Mycobacterium abscessus 26 profiles 2019-10-15
Mab_argH; Mab_cya; Mab_gnd; Mab_murC; Mab_pta; Mab_purH; Mab_rpoB
Mycobacterium massiliense 12 profiles 2019-10-15
Mma_argH; Mma_cya; Mma_gnd; Mma_murC; Mma_pta; Mma_purH; Mma_rpoB
Mycoplasma agalactiae 35 profiles 2019-10-15
dnaA; gltX; gyrB; metS; tufA
Mycoplasma bovis 180 profiles 2019-10-15
adh1; gltX; gpsA; gyrB; pta2; tdk; tkt
Mycoplasma flocculare 8 profiles 2019-10-15
adk; rpoB; tpiA
Mycoplasma hyopneumoniae 130 profiles 2019-10-15
adk; rpoB; tpiA
Mycoplasma hyorhinis 104 profiles 2019-10-15
dnaA; rpoB; gyrB; gltX; adk; gmk
Mycoplasma iowae 35 profiles 2019-10-15
dppC; ulaA; valS; rpoC; leuS; kdpA
Mycoplasma pneumoniae 34 profiles 2019-10-15
ppa; pgm; gyrB; gmk; glyA; atpA; arcC; adk
Mycoplasma synoviae 104 profiles 2019-10-15
adk; atpG; efp; gmk; nagC; ppa; recA
Neisseria spp. 14807 profiles 2019-10-15
abcZ; adk; aroE; fumC; gdh; pdhC; pgm
Orientia tsutsugamushi 98 profiles 2019-10-15
gpsA; mdh; nrdB; nuoF; ppdK; sucB; sucD
Ornithobacterium rhinotracheale 35 profiles 2019-10-15
adk; aroE; fumC; gdhA; mdh; pgi; pmi
Paenibacillus larvae 24 profiles 2019-10-15
glpF; sigF; glpT; Natrans; rpoB; ftsA; clpC
Pasteurella multocida#1 372 profiles 2019-10-15
RIRDC_adk; RIRDC_est; RIRDC_pmi; RIRDC_zwf; RIRDC_mdh; RIRDC_gdh; RIRDC_pgi
Pasteurella multocida#2 124 profiles 2019-10-15
mh_adk; mh_aroA; mh_deoD; mh_gdhA; mh_g6pd; mh_mdh; mh_pgi
Pediococcus pentosaceus 17 profiles 2019-10-15
gyrB; pyc; pgm; leuS; glnA; dalR; pgI
Photobacterium damselae 56 profiles 2019-10-15
glpF; gyrB; metG; pntA; pyrC; toxR
Piscirickettsia salmonis 24 profiles 2019-10-15
dnaK; efp; fumC; glyA; murG; rpoD; trpB
Porphyromonas gingivalis 138 profiles 2019-10-15
ftsQ; gpdxJ; hagB; mcmA; pepO; pga; recA
Propionibacterium acnes 152 profiles 2019-10-15
aroE; atpD; gmk; guaA; lepA; sodA; tly; CAMP2
Pseudomonas aeruginosa 3341 profiles 2019-10-15
acsA; aroE; guaA; mutL; nuoD; ppsA; trpE
Pseudomonas fluorescens 110 profiles 2019-10-15
glnS; gyrB; ileS; nuoD; recA; rpoB; rpoD
Pseudomonas putida 93 profiles 2019-10-15
argS; gyrB; ileS; nuoC; ppsA; recA; rpoB; rpoD
Rhodococcus spp. 39 profiles 2019-10-15
gapdh; tpi; mdh; icl; rpoB; recA; adk
Riemerella anatipestifer 44 profiles 2019-10-15
dnaB; groEL; gyrA; mdh; gluD; gpi; rpoB
Salmonella enterica 6311 profiles 2019-10-15
aroC; dnaN; hemD; hisD; purE; sucA; thrA
Saprolegnia parasitica 15 profiles 2019-10-15
ALTS1; COX1; GLUT; NAD1; RPB2; SHMT; TUBB
Sinorhizobium spp. 136 profiles 2019-10-15
asd; edd; gap; glnD; gnd; nuoE1; ordL2; recA; sucA; zwf
Staphylococcus aureus 5681 profiles 2019-10-15
arcC; aroE; glpF; gmk; pta; tpi; yqiL
Staphylococcus epidermidis 910 profiles 2019-10-15
arcC; aroE; gtr; mutS; pyrR; tpiA; yqiL
Staphylococcus haemolyticus 68 profiles 2019-10-15
arcC; SH_1200; hemH; leuB; SH1431; cfxE; Ribose_ABC
Staphylococcus hominis 57 profiles 2019-10-15
arcC; glpK; gtr; pta; tpiA; tuf
Staphylococcus lugdunensis 42 profiles 2019-10-15
aroE; dat; ddl; gmk; ldh; recA; yqiL
Staphylococcus pseudintermedius 1565 profiles 2019-10-15
ack; cpn60; fdh; pta; purA; sar; tuf
Stenotrophomonas maltophilia 360 profiles 2019-10-15
atpD; gapA; guaA; mutM; nuoD; ppsA; recA
Streptococcus agalactiae 1400 profiles 2019-10-15
adhP; pheS; atr; glnA; sdhA; glcK; tkt
Streptococcus bovis/equinus complex (SBSEC) 214 profiles 2019-10-15
ddl; gki; glnA; mutS; mutS2; pheS; proS; pyrE; thrS; tpi
Streptococcus canis 46 profiles 2019-10-15
gki; gtr; murI; mutS; recP; xpt; yqiZ
Streptococcus dysgalactiae equisimilis 470 profiles 2019-10-15
gki; gtr; murI; mutS; recP; xpt; atoB
Streptococcus gallolyticus 109 profiles 2019-10-15
aroE; glgB; nifS; p20; tkt; trpD; uvrA
Streptococcus oralis 78 profiles 2019-10-15
aroE; ddl; gdh; gki; hexB; recP; xpt
Streptococcus pneumoniae 15058 profiles 2019-10-15
aroE; gdh; gki; recP; spi; xpt; ddl
Streptococcus pyogenes 1165 profiles 2019-10-15
gki; gtr; murI; mutS; recP; xpt; yqiL
Streptococcus suis 1244 profiles 2019-10-15
aroA; cpn60; dpr; gki; mutS; recA; thrA
Streptococcus thermophilus 125 profiles 2019-10-15
ddlA; glcK; proA; ptsI; serB; tkt
Streptococcus thermophilus#2 119 profiles 2019-10-15
carB; clpX; dnaA; murC; murE; pepN; pepX; pyrG; recA; rpoB
Streptococcus uberis 1165 profiles 2019-10-15
arcC; ddl; gki; recP; tdk; tpi; yqiL
Streptococcus zooepidemicus 396 profiles 2019-10-15
arcC; nrdE; proS; spi; tdk; tpi; yqiL
Streptomyces spp 234 profiles 2019-10-15
16S; atpD; gyrB; recA; rpoB; trpB
Taylorella spp. 60 profiles 2019-10-15
gltA; gyrB; fh; shmt; tyrB; adk; txn
Tenacibaculum spp. 125 profiles 2019-10-15
atpA; dnaK; glyA; gyrB; infB; rlmN; tgt
Treponema pallidum 66 profiles 2019-10-15
TP0136; TP0548; TP0705
Trichomonas vaginalis 60 profiles 2019-10-15
TRYP; GLUT; FT2A; ALTS; DMRP; SHMT; M6PI
Ureaplasma spp. 164 profiles 2019-10-15
ftsH; rpL22; thrS; valS
Vibrio cholerae 984 profiles 2019-10-15
adk; gyrB; mdh; metE; pntA; purM; pyrC
Vibrio cholerae#2 422 profiles 2019-10-15
asd; dnaE; lap; pgm; recA
Vibrio parahaemolyticus 2208 profiles 2019-10-15
dnaE; gyrB; recA; dtdS; pntA; pyrC; tnaA
Vibrio spp. 160 profiles 2019-10-15
gyrB; pyrH; recA; atpA
Vibrio tapetis 10 profiles 2019-10-15
atpA; fstZ; gapA; hsp60; pyrH; rctB; recA; rpoA; rpoD; topA
Vibrio vulnificus 530 profiles 2019-10-15
glp; gyrB; mdh; metG; purM; dtdS; lysA; pntA; pyrC; tnaA
Wolbachia 524 profiles 2019-10-15
gatB; coxA; hcpA; ftsZ; fbpA
Xylella fastidiosa 87 profiles 2019-10-15
leuA; petC; malF; cysG; holC; nuoL; gltT
Yersinia pseudotuberculosis 515 profiles 2019-10-15
adk; argA; aroA; glnA; thrA; tmk; trpE
Yersinia ruckeri 30 profiles 2019-10-15
glnA; gyrB; dnaJ; thrA; hsp60; recA
Yersinia spp. 170 profiles 2019-10-15
aarF; dfp; galR; glnS; hemA; rfaE; speA

MLST profiles and sequences

This page is provided as a service to enable the easy importation and linking of publicly-accessible MLST profile and allele data.

Databases hosted on other sites sometimes only make their sequences and profile definitions available as web pages, containing HTML markup code, that makes their automatic importation to offline tools difficult. Here we use a common format so that scripts can easily parse the data for local use. Links to the MLST databases that these lists are generated from are provided. These databases remain the definitive source and all ST and allele assignments are done by their respective curators.

Profiles are available in tab-delimited text format. Sequences are available in FASTA format.