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MLST allelic profiles and sequences

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The information in this table is available in XML format for automated parsing.

Database Data Retrieved
Achromobacter spp. 392 profiles 2017-11-20
nusA; rpoB; eno; gltB; lepA; nuoL; nrdA
Acinetobacter baumannii#1 1638 profiles 2017-11-20
Oxf_gltA; Oxf_gyrB; Oxf_gdhB; Oxf_recA; Oxf_cpn60; Oxf_gpi; Oxf_rpoD
Acinetobacter baumannii#2 1155 profiles 2017-11-20
Pas_cpn60; Pas_fusA; Pas_gltA; Pas_pyrG; Pas_recA; Pas_rplB; Pas_rpoB
Aeromonas spp. 514 profiles 2017-11-20
gyrB; groL; gltA; metG; ppsA; recA
Anaplasma phagocytophilum 118 profiles 2017-11-20
pheS; glyA; fumC; mdh; sucA; dnaN; atpA
Arcobacter spp. 679 profiles 2017-11-20
aspA; atpA; glnA; gltA; glyA; pgm; tkt
Aspergillus fumigatus 48 profiles 2017-11-20
ANX4; BGT1; CAT1; LIP; MAT1_2; SODB; ZRF2
Bacillus cereus 1463 profiles 2017-11-20
glp; gmk; ilv; pta; pur; pyc; tpi
Bacillus licheniformis 27 profiles 2017-11-20
adk; ccpA; recF; rpoB; spo0A; sucC
Bacillus subtilis 155 profiles 2017-11-20
glpF; ilvD; pta; purH; pycA; rpoD; tpiA
Bartonella bacilliformis 14 profiles 2017-11-20
ftsZ; flaA; ribC; rnpB; rpoB; bvrR; groEL
Bartonella henselae 33 profiles 2017-11-20
_16S; batR; ftsZ; gltA; groEL; nlpD; ribC; rpoB
Bordetella spp. 82 profiles 2017-11-20
adk; fumC; glyA; tyrB; icd; pepA; pgm
Borrelia spp. 753 profiles 2017-11-20
clpA; clpX; nifS; pepX; pyrG; recG; rplB; uvrA
Brachyspira hampsonii 20 profiles 2017-11-20
Bha_adh; Bha_est; Bha_gdh; Bha_glpK; Bha_pgm; Bha_thi
Brachyspira hyodysenteriae 238 profiles 2017-11-20
Bhy_adh; Bhy_alp; Bhy_est; Bhy_gdh; Bhy_glpK; Bhy_pgm; Bhy_thi
Brachyspira intermedia 83 profiles 2017-11-20
Bin_adh; Bin_alp; Bin_est; Bin_gdh; Bin_glpK; Bin_pgm; Bin_thi
Brachyspira pilosicoli 124 profiles 2017-11-20
Bpi_adh; Bpi_alp; Bpi_est; Bpi_gdh; Bpi_glpK; Bpi_pgm; Bpi_thi
Brachyspira spp. 36 profiles 2017-11-20
Bra_adh; Bra_alp; Bra_est; Bra_gdh; Bra_glp; Bra_pgm; Bra_thi
Brucella spp. 76 profiles 2017-11-20
gap; aroA; glk; dnaK; gyrB; trpE; cobQ; int_hyp; omp25
Burkholderia cepacia complex 1357 profiles 2017-11-20
atpD; gltB; gyrB; recA; lepA; phaC; trpB
Burkholderia pseudomallei 1644 profiles 2017-11-20
ace; gltB; gmhD; lepA; lipA; narK; ndh
Campylobacter concisus/curvus 130 profiles 2017-11-20
Cco_aspA; Cco_atpA; Cco_glnA; Cco_gltA; Cco_glyA; Cco_ilvD; Cco_pgm
Campylobacter fetus 69 profiles 2017-11-20
Cfe_aspA; Cfe_glnA; Cfe_gltA; Cfe_glyA; Cfe_pgm; Cfe_tkt; Cfe_uncA
Campylobacter helveticus 9 profiles 2017-11-20
Che_aspA; Che_atpA; Che_glnA; Che_gltA; Che_glyA; Che_pgm; Che_tkt
Campylobacter hyointestinalis 131 profiles 2017-11-20
Chy_aspA; Chy_atpA; Chy_glnA; Chy_gltA; Chy_glyA; Chy_pgm; Chy_tkt
Campylobacter insulaenigrae 43 profiles 2017-11-20
Cin_aspA; Cin_atpA; Cin_glnA; Cin_glyA; Cin_pgi; Cin_pgm; Cin_tkt
Campylobacter jejuni 9023 profiles 2017-11-20
aspA; glnA; gltA; glyA; pgm; tkt; uncA
Campylobacter lanienae 171 profiles 2017-11-20
Cln_aspA; Cln_atpA; Cln_glnA; Cln_gltA; Cln_glyA; Cln_pgm; Cln_tkt
Campylobacter lari 138 profiles 2017-11-20
Cla_adk; Cla_atpA; Cla_glnA; Cla_glyA; Cla_pgi; Cla_pgm; Cla_tkt
Campylobacter sputorum 16 profiles 2017-11-20
Csp_aspA; Csp_atpA; Csp_glnA; Csp_gltA; Csp_glyA; Csp_pgm; Csp_tkt
Campylobacter upsaliensis 204 profiles 2017-11-20
Cup_adk; Cup_aspA; Cup_atpA; Cup_glnA; Cup_glyA; Cup_pgi; Cup_tkt
Candida albicans 3436 profiles 2017-11-20
AAT1a; ACC1; ADP1; MPIb; SYA1; VPS13; ZWF1b
Candida glabrata 77 profiles 2017-11-20
FKS; LEU2; NMT1; TRP1; UGP1; URA3
Candida krusei 188 profiles 2017-11-20
HIS3; LEU2; NMT1; TRP1; ADE2; LYS2D
Candida tropicalis 717 profiles 2017-11-20
ICL1; MDR1; SAPT2; SAPT4; XYR1; ZWF1a
Carnobacterium maltaromaticum 39 profiles 2017-11-20
dapE; ddlA; glpQ; ilvE; leuS; pyc; pyrE
Chlamydiales spp. 197 profiles 2017-11-20
gatA; oppA; hflX; gidA; enoA; hemN; fumC
Citrobacter freundii 160 profiles 2017-11-20
aspC; clpX; fadD; mdh; arcA; dnaG; lysP
Clonorchis sinensis 254 profiles 2017-11-20
Actin; Cox1; Cox3; Ef_1a; Its1; Nad4; Nad5; Tubulin
Clostridium botulinum 98 profiles 2017-11-20
aroE; mdh; aceK; oppB; rpoB; recA; hsp
Clostridium difficile 456 profiles 2017-11-20
adk; atpA; dxr; glyA; recA; sodA; tpi
Clostridium septicum 8 profiles 2017-11-20
ddl; dnaK; glpK; groEL; gyrA; recA; tpi
Corynebacterium diphtheriae 510 profiles 2017-11-20
atpA; dnaE; dnaK; fusA; leuA; odhA; rpoB
Cronobacter spp. 623 profiles 2017-11-20
atpD; fusA; glnS; gltB; gyrB; infB; pps
Dichelobacter nodosus 115 profiles 2017-11-20
dcd; dtdA; folK; recR; rlmH; rplI; tsaE
Edwardsiella spp. 18 profiles 2017-11-20
adk; atpD; dnaJ; gapA; glnA; hsp60; phoR; pyrG; rpoA; tuf
Enterobacter cloacae 984 profiles 2017-11-20
dnaA; fusA; gyrB; leuS; pyrG; rplB; rpoB
Enterococcus faecalis 838 profiles 2017-11-20
gdh; gyd; pstS; gki; aroE; xpt; yqiL
Enterococcus faecium 1391 profiles 2017-11-20
atpA; ddl; gdh; purK; gyd; pstS; adk
Escherichia coli#1 7182 profiles 2017-11-20
adk; fumC; gyrB; icd; mdh; purA; recA
Escherichia coli#2 841 profiles 2017-11-20
dinB; icdA; pabB; polB; putP; trpA; trpB; uidA
Flavobacterium psychrophilum 166 profiles 2017-11-20
atpA; dnaK; fumC; gyrB; murG; trpB; tuf
Gallibacterium anatis 81 profiles 2017-11-20
adk; atpD; fumC; gyrB; infB; mdh; recN; thdF
Haemophilus influenzae 1837 profiles 2017-11-20
adk; atpG; frdB; fucK; mdh; pgi; recA
Haemophilus parasuis 274 profiles 2017-11-20
atpD; infB; mdh; rpoB; _6pgd; g3pd; frdB
Helicobacter cinaedi 18 profiles 2017-11-20
_23S_rRNA; ppa; aspA; aroE; atpA; tkt; cdtB
Helicobacter pylori 3204 profiles 2017-11-20
atpA; efp; mutY; ppa; trpC; ureI; yphC
Helicobacter suis 138 profiles 2017-11-20
atpA; efp; mutY; ppa; trpC; ureAB; yphC
Kingella kingae 70 profiles 2017-11-20
abcZ; adk; aroE; cpn60; gdh; recA
Klebsiella oxytoca 192 profiles 2017-11-20
gapA; infB; mdh; pgi; phoE; rpoB; tonB
Klebsiella pneumoniae 3013 profiles 2017-11-20
gapA; infB; mdh; pgi; phoE; rpoB; tonB
Kudoa septempunctata 3 profiles 2017-11-20
cox1; rnl
Lactobacillus salivarius 25 profiles 2017-11-20
pstB; rpsB; nrdB; rpoA; parB
Leptospira spp. 202 profiles 2017-11-19
glmU; pntA; sucA; tpiA; pfkB; mreA; caiB
Leptospira spp.#2 106 profiles 2017-11-20
adk_2; glmU_2; icdA_2; lipL32_2; lipL41_2; mreA_2; pntA_2
Leptospira spp.#3 143 profiles 2017-11-20
adk_3; icdA_3; lipL41_3; rrs2_3; secY_3; lipL32_3
Listeria monocytogenes 1336 profiles 2017-11-20
abcZ; bglA; cat; dapE; dat; ldh; lhkA
Macrococcus canis 22 profiles 2017-11-20
ack; cpn60; fdh; pta; purA; sar; tuf
Macrococcus caseolyticus 12 profiles 2017-11-20
ack; cpn60; fdh; pta; purA; sar; tuf
Mannheimia haemolytica 38 profiles 2017-11-20
adk; aroE; deoD; gapDH; gnd; mdh; zwf
Melissococcus plutonius 34 profiles 2017-11-20
argE; galK; gbpB; purR
Moraxella catarrhalis 745 profiles 2017-09-22
abcZ; adk; efp; fumC; glyBETA; mutY; ppa; trpE
Mycobacterium abscessus 26 profiles 2017-11-20
Mab_argH; Mab_cya; Mab_gnd; Mab_murC; Mab_pta; Mab_purH; Mab_rpoB
Mycobacterium massiliense 12 profiles 2017-11-20
Mma_argH; Mma_cya; Mma_gnd; Mma_murC; Mma_pta; Mma_purH; Mma_rpoB
Mycoplasma agalactiae 34 profiles 2017-11-20
dnaA; gltX; gyrB; metS; tufA
Mycoplasma bovis 105 profiles 2017-11-20
adh1; gltX; gpsA; gyrB; pta2; tdk; tkt
Mycoplasma hyopneumoniae 70 profiles 2017-11-20
adk; rpoB; tpiA
Mycoplasma hyorhinis 70 profiles 2017-11-20
dnaA; rpoB; gyrB; gltX; adk; gmk
Mycoplasma iowae 23 profiles 2017-11-20
dppC; ulaA; valS; rpoC; leuS; kdpA
Mycoplasma pneumoniae 32 profiles 2017-11-20
ppa; pgm; gyrB; gmk; glyA; atpA; arcC; adk
Mycoplasma synoviae 46 profiles 2017-11-20
adk; atpG; efp; gmk; nagC; ppa; recA
Neisseria spp. 13190 profiles 2017-11-20
abcZ; adk; aroE; fumC; gdh; pdhC; pgm
Orientia tsutsugamushi 92 profiles 2017-11-20
gpsA; mdh; nrdF; nuoF; ppdK; sucB; sucD
Ornithobacterium rhinotracheale 31 profiles 2017-11-20
adk; aroE; fumC; gdhA; mdh; pgi; pmi
Paenibacillus larvae 24 profiles 2017-11-20
glpF; sigF; glpT; Natrans; rpoB; ftsA; clpC
Pasteurella multocida#1 344 profiles 2017-11-20
RIRDC_adk; RIRDC_est; RIRDC_pmi; RIRDC_zwf; RIRDC_mdh; RIRDC_gdh; RIRDC_pgi
Pasteurella multocida#2 72 profiles 2017-11-20
mh_adk; mh_aroA; mh_deoD; mh_gdhA; mh_g6pd; mh_mdh; mh_pgi
Pediococcus pentosaceus 17 profiles 2017-11-20
gyrB; pyc; pgm; leuS; glnA; dalR; pgI
Photobacterium damselae 55 profiles 2017-11-20
glpF; gyrB; metG; pntA; pyrC; toxR
Porphyromonas gingivalis 138 profiles 2017-11-20
ftsQ; gpdxJ; hagB; mcmA; pepO; pga; recA
Propionibacterium acnes 127 profiles 2017-11-20
aroE; atpD; gmk; guaA; lepA; sodA; tly; CAMP2
Pseudomonas aeruginosa 2854 profiles 2017-11-20
acs; aro; gua; mut; nuo; pps; trp
Pseudomonas fluorescens 102 profiles 2017-11-20
glnS; gyrB; ileS; nuoD; recA; rpoB; rpoD
Rhodococcus spp. 39 profiles 2017-11-20
gapdh; tpi; mdh; icl; rpoB; recA; adk
Riemerella anatipestifer 44 profiles 2017-11-20
dnaB; groEL; gyrA; mdh; gluD; gpi; rpoB
Salmonella enterica 3848 profiles 2017-11-20
aroC; dnaN; hemD; hisD; purE; sucA; thrA
Sinorhizobium spp. 136 profiles 2017-11-20
asd; edd; gap; glnD; gnd; nuoE1; ordL2; recA; sucA; zwf
Staphylococcus aureus 4381 profiles 2017-11-20
arcC; aroE; glpF; gmk; pta; tpi; yqiL
Staphylococcus epidermidis 679 profiles 2017-11-20
arcC; aroE; gtr; mutS; pyrR; tpiA; yqiL
Staphylococcus haemolyticus 43 profiles 2017-11-20
arcC; SH_1200; hemH; leuB; SH1431; cfxE; Ribose_ABC
Staphylococcus lugdunensis 31 profiles 2017-11-20
aroE; dat; ddl; gmk; ldh; recA; yqiL
Staphylococcus pseudintermedius 798 profiles 2017-11-20
ack; cpn60; fdh; pta; purA; sar; tuf
Stapylococcus hominis 57 profiles 2017-11-20
arcC; glpK; gtr; pta; tpiA; tuf
Stenotrophomonas maltophilia 259 profiles 2017-11-20
atpD; gapA; guaA; mutM; nuoD; ppsA; recA
Streptococcus agalactiae 1154 profiles 2017-11-20
adhP; pheS; atr; glnA; sdhA; glcK; tkt
Streptococcus bovis/equinus complex (SBSEC) 214 profiles 2017-11-20
ddl; gki; glnA; mutS; mutS2; pheS; proS; pyrE; thrS; tpi
Streptococcus canis 38 profiles 2017-11-20
gki; gtr; murI; mutS; recP; xpt; yqiZ
Streptococcus dysgalactiae equisimilis 373 profiles 2017-11-20
gki; gtr; murI; mutS; recP; xpt; atoB
Streptococcus gallolyticus 109 profiles 2017-11-20
aroE; glgB; nifS; p20; tkt; trpD; uvrA
Streptococcus oralis 78 profiles 2017-11-20
aroE; ddl; gdh; gki; hexB; recP; xpt
Streptococcus pneumoniae 13616 profiles 2017-11-20
aroE; gdh; gki; recP; spi; xpt; ddl
Streptococcus pyogenes 966 profiles 2017-11-20
gki; gtr; murI; mutS; recP; xpt; yqiL
Streptococcus suis 959 profiles 2017-11-20
aroA; cpn60; dpr; gki; mutS; recA; thrA
Streptococcus thermophilus 125 profiles 2017-11-20
ddlA; glcK; proA; ptsI; serB; tkt
Streptococcus thermophilus#2 119 profiles 2017-11-20
carB; clpX; dnaA; murC; murE; pepN; pepX; pyrG; recA; rpoB
Streptococcus uberis 875 profiles 2017-11-20
arcC; ddl; gki; recP; tdk; tpi; yqiL
Streptococcus zooepidemicus 378 profiles 2017-11-20
arcC; nrdE; proS; spi; tdk; tpi; yqiL
Streptomyces spp 234 profiles 2017-11-20
_16S; atpD; gyrB; recA; rpoB; trpB
Taylorella spp. 56 profiles 2017-11-20
gltA; gyrB; fh; shmt; tyrB; adk; txn
Tenacibaculum spp. 125 profiles 2017-11-20
atpA; dnaK; glyA; gyrB; infB; rlmN; tgt
Trichomonas vaginalis 60 profiles 2017-11-20
TRYP; GLUT; FT2A; ALTS; DMRP; SHMT; M6PI
Vibrio cholerae 516 profiles 2017-11-20
adk; gyrB; mdh; metE; pntA; purM; pyrC
Vibrio parahaemolyticus 1811 profiles 2017-11-20
dnaE; gyrB; recA; dtdS; pntA; pyrC; tnaA
Vibrio spp. 149 profiles 2017-11-20
gyrB; pyrH; recA; atpA
Vibrio tapetis 10 profiles 2017-11-20
atpA; fstZ; gapA; hsp60; pyrH; rctB; recA; rpoA; rpoD; topA
Vibrio vulnificus 364 profiles 2017-11-20
glp; gyrB; mdh; metG; purM; dtdS; lysA; pntA; pyrC; tnaA
Wolbachia 478 profiles 2017-11-20
gatB; coxA; hcpA; ftsZ; fbpA
Xylella fastidiosa 79 profiles 2017-11-20
leuA; petC; malF; cysG; holC; nuoL; gltT
Yersinia pseudotuberculosis 280 profiles 2017-09-22
adk; argA; aroA; glnA; thrA; tmk; trpE
Yersinia ruckeri 30 profiles 2017-11-20
glnA; gyrB; dnaJ; thrA; hsp60; recA
Yersinia spp. 170 profiles 2017-11-20
aarF; dfp; galR; glnS; hemA; rfaE; speA

MLST profiles and sequences

This page is provided as a service to enable the easy importation and linking of publicly-accessible MLST profile and allele data.

Databases hosted on other sites sometimes only make their sequences and profile definitions available as web pages, containing HTML markup code, that makes their automatic importation to offline tools difficult. Here we use a common format so that scripts can easily parse the data for local use. Links to the MLST databases that these lists are generated from are provided. These databases remain the definitive source and all ST and allele assignments are done by their respective curators.

Profiles are available in tab-delimited text format. Sequences are available in FASTA format.