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MLST allelic profiles and sequences

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The information in this table is available in XML format for automated parsing.

Database Data Retrieved
Achromobacter spp. 480 profiles 2020-03-29
nusA; rpoB; eno; gltB; lepA; nuoL; nrdA
Acinetobacter baumannii#1 2117 profiles 2020-03-29
Oxf_gltA; Oxf_gyrB; Oxf_gdhB; Oxf_recA; Oxf_cpn60; Oxf_gpi; Oxf_rpoD
Acinetobacter baumannii#2 1459 profiles 2020-03-29
Pas_cpn60; Pas_fusA; Pas_gltA; Pas_pyrG; Pas_recA; Pas_rplB; Pas_rpoB
Aeromonas spp. 656 profiles 2020-03-29
gyrB; groL; gltA; metG; ppsA; recA
Anaplasma phagocytophilum 184 profiles 2020-03-29
pheS; glyA; fumC; mdh; sucA; dnaN; atpA
Arcobacter spp. 831 profiles 2020-03-29
aspA; atpA; glnA; gltA; glyA; pgm; tkt
Aspergillus fumigatus 48 profiles 2020-03-29
ANX4; BGT1; CAT1; LIP; MAT1_2; SODB; ZRF2
Bacillus cereus 2485 profiles 2020-03-29
glp; gmk; ilv; pta; pur; pyc; tpi
Bacillus licheniformis 47 profiles 2020-03-29
adk; ccpA; recF; rpoB; spo0A; sucC
Bacillus subtilis 175 profiles 2020-03-29
glpF; ilvD; pta; purH; pycA; rpoD; tpiA
Bartonella bacilliformis 14 profiles 2020-03-29
ftsZ; flaA; ribC; rnpB; rpoB; bvrR; groEL
Bartonella henselae 36 profiles 2020-03-29
16S; batR; ftsZ; gltA; groEL; nlpD; ribC; rpoB
Bartonella washoensis 21 profiles 2020-03-29
16S; ftsZ; gltA; groEL; ribC; rpoB
Bordetella spp. 96 profiles 2020-03-29
adk; fumC; glyA; tyrB; icd; pepA; pgm
Borrelia spp. 933 profiles 2020-03-29
clpA; clpX; nifS; pepX; pyrG; recG; rplB; uvrA
Brachyspira hampsonii 20 profiles 2020-03-29
Bha_adh; Bha_est; Bha_gdh; Bha_glpK; Bha_pgm; Bha_thi
Brachyspira hyodysenteriae 263 profiles 2020-03-29
Bhy_adh; Bhy_alp; Bhy_est; Bhy_gdh; Bhy_glpK; Bhy_pgm; Bhy_thi
Brachyspira intermedia 83 profiles 2020-03-29
Bin_adh; Bin_alp; Bin_est; Bin_gdh; Bin_glpK; Bin_pgm; Bin_thi
Brachyspira pilosicoli 94 profiles 2020-03-29
Bpi_adh; Bpi_alp; Bpi_est; Bpi_gdh; Bpi_glpK; Bpi_pgm; Bpi_thi
Brachyspira spp. 36 profiles 2020-03-29
Bra_adh; Bra_alp; Bra_est; Bra_gdh; Bra_glp; Bra_pgm; Bra_thi
Brucella spp. 96 profiles 2020-03-29
gap; aroA; glk; dnaK; gyrB; trpE; cobQ; int_hyp; omp25
Burkholderia cepacia complex 1744 profiles 2020-03-29
atpD; gltB; gyrB; recA; lepA; phaC; trpB
Burkholderia pseudomallei 1854 profiles 2020-03-29
ace; gltB; gmhD; lepA; lipA; narK; ndh
Campylobacter concisus/curvus 130 profiles 2020-03-29
Cco_aspA; Cco_atpA; Cco_glnA; Cco_gltA; Cco_glyA; Cco_ilvD; Cco_pgm
Campylobacter fetus 69 profiles 2020-03-29
Cfe_aspA; Cfe_glnA; Cfe_gltA; Cfe_glyA; Cfe_pgm; Cfe_tkt; Cfe_uncA
Campylobacter helveticus 9 profiles 2020-03-29
Che_aspA; Che_atpA; Che_glnA; Che_gltA; Che_glyA; Che_pgm; Che_tkt
Campylobacter hyointestinalis 134 profiles 2020-03-29
Chy_aspA; Chy_atpA; Chy_glnA; Chy_gltA; Chy_glyA; Chy_pgm; Chy_tkt
Campylobacter insulaenigrae 43 profiles 2020-03-29
Cin_aspA; Cin_atpA; Cin_glnA; Cin_glyA; Cin_pgi; Cin_pgm; Cin_tkt
Campylobacter jejuni 10299 profiles 2020-03-29
aspA; glnA; gltA; glyA; pgm; tkt; uncA
Campylobacter lanienae 172 profiles 2020-03-29
Cln_aspA; Cln_atpA; Cln_glnA; Cln_gltA; Cln_glyA; Cln_pgm; Cln_tkt
Campylobacter lari 161 profiles 2020-03-29
Cla_adk; Cla_atpA; Cla_glnA; Cla_glyA; Cla_pgi; Cla_pgm; Cla_tkt
Campylobacter sputorum 16 profiles 2020-03-29
Csp_aspA; Csp_atpA; Csp_glnA; Csp_gltA; Csp_glyA; Csp_pgm; Csp_tkt
Campylobacter upsaliensis 204 profiles 2020-03-29
Cup_adk; Cup_aspA; Cup_atpA; Cup_glnA; Cup_glyA; Cup_pgi; Cup_tkt
Candida albicans 3569 profiles 2020-03-29
AAT1a; ACC1; ADP1; MPIb; SYA1; VPS13; ZWF1b
Candida glabrata 177 profiles 2020-03-29
FKS; LEU2; NMT1; TRP1; UGP1; URA3
Candida krusei 191 profiles 2020-03-29
HIS3; LEU2; NMT1; TRP1; ADE2; LYS2D
Candida tropicalis 959 profiles 2020-03-29
ICL1; MDR1; SAPT2; SAPT4; XYR1; ZWF1a
Candidatus Liberibacter solanacearum 10 profiles 2020-03-29
adk; atpA; fbpA; ftsZ; glyA; groEL; gyrB
Carnobacterium maltaromaticum 56 profiles 2020-03-29
dapE; ddlA; glpQ; ilvE; leuS; pyc; pyrE
Chlamydiales spp. 280 profiles 2020-03-29
gatA; oppA; hflX; gidA; enoA; hemN; fumC
Citrobacter freundii 526 profiles 2020-03-29
aspC; clpX; fadD; mdh; arcA; dnaG; lysP
Clonorchis sinensis 254 profiles 2020-03-29
Actin; Cox1; Cox3; Ef_1a; Its1; Nad4; Nad5; Tubulin
Clostridioides difficile 670 profiles 2020-03-29
adk; atpA; dxr; glyA; recA; sodA; tpi
Clostridium botulinum 120 profiles 2020-03-29
aroE; mdh; aceK; oppB; rpoB; recA; hsp
Clostridium septicum 8 profiles 2020-03-29
ddl; dnaK; glpK; groEL; gyrA; recA; tpi
Corynebacterium diphtheriae 677 profiles 2020-03-29
atpA; dnaE; dnaK; fusA; leuA; odhA; rpoB
Cronobacter spp. 735 profiles 2020-03-29
atpD; fusA; glnS; gltB; gyrB; infB; pps
Dichelobacter nodosus 115 profiles 2020-03-29
dcd; dtdA; folK; recR; rlmH; rplI; tsaE
Edwardsiella spp. 18 profiles 2020-03-29
adk; atpD; dnaJ; gapA; glnA; hsp60; phoR; pyrG; rpoA; tuf
Enterobacter cloacae 1352 profiles 2020-03-29
dnaA; fusA; gyrB; leuS; pyrG; rplB; rpoB
Enterococcus faecalis 985 profiles 2020-03-29
gdh; gyd; pstS; gki; aroE; xpt; yqiL
Enterococcus faecium 1706 profiles 2020-03-29
atpA; ddl; gdh; purK; gyd; pstS; adk
Escherichia coli#1 9634 profiles 2020-03-29
adk; fumC; gyrB; icd; mdh; purA; recA
Escherichia coli#2 986 profiles 2020-03-29
dinB; icdA; pabB; polB; putP; trpA; trpB; uidA
Flavobacterium psychrophilum 194 profiles 2020-03-29
atpA; dnaK; fumC; gyrB; murG; trpB; tuf
Gallibacterium anatis 81 profiles 2020-03-29
adk; atpD; fumC; gyrB; infB; mdh; recN; thdF
Haemophilus influenzae 2302 profiles 2020-03-29
adk; atpG; frdB; fucK; mdh; pgi; recA
Haemophilus parasuis 397 profiles 2020-03-29
atpD; infB; mdh; rpoB; 6pgd; g3pd; frdB
Helicobacter cinaedi 20 profiles 2020-03-29
23S_rRNA; ppa; aspA; aroE; atpA; tkt; cdtB
Helicobacter pylori 3687 profiles 2020-03-29
atpA; efp; mutY; ppa; trpC; ureI; yphC
Helicobacter suis 141 profiles 2020-03-29
atpA; efp; mutY; ppa; trpC; ureAB; yphC
Kingella kingae 70 profiles 2020-03-29
abcZ; adk; aroE; cpn60; gdh; recA
Klebsiella aerogenes 203 profiles 2020-03-29
dnaA; fusA; gyrB; leuS; pryG; rplB; rpoB
Klebsiella oxytoca 308 profiles 2020-03-29
gapA; infB; mdh; pgi; phoE; rpoB; tonB
Klebsiella pneumoniae 4925 profiles 2020-03-29
gapA; infB; mdh; pgi; phoE; rpoB; tonB
Kudoa septempunctata 3 profiles 2020-03-29
cox1; rnl
Lactobacillus salivarius 25 profiles 2020-03-29
pstB; rpsB; nrdB; rpoA; parB
Leptospira spp. 324 profiles 2020-03-29
glmU_1; pntA_1; sucA_1; tpiA_1; pfkB_1; mreA_1; caiB_1
Leptospira spp.#2 273 profiles 2020-03-29
adk_2; glmU_2; icdA_2; lipL32_2; lipL41_2; mreA_2; pntA_2
Leptospira spp.#3 194 profiles 2020-03-29
adk_3; icdA_3; lipL41_3; rrs2_3; secY_3; lipL32_3
Listeria monocytogenes 2098 profiles 2020-03-29
abcZ; bglA; cat; dapE; dat; ldh; lhkA
Macrococcus canis 83 profiles 2020-03-29
ack; cpn60; fdh; pta; purA; sar; tuf
Macrococcus caseolyticus 67 profiles 2020-03-29
ack; cpn60; fdh; pta; purA; sar; tuf
Mannheimia haemolytica 51 profiles 2020-03-29
adk; aroE; deoD; gapDH; gnd; mdh; zwf
Melissococcus plutonius 37 profiles 2020-03-29
argE; galK; gbpB; purR
Moraxella catarrhalis 773 profiles 2020-03-29
abcZ; adk; efp; fumC; glyBeta; mutY; ppa; trpE
Mycobacteria spp. 873 profiles 2020-03-29
S14Z; L35; S19; L19; S12; S8; L16; S7
Mycobacterium abscessus 26 profiles 2020-03-29
Mab_argH; Mab_cya; Mab_gnd; Mab_murC; Mab_pta; Mab_purH; Mab_rpoB
Mycobacterium massiliense 12 profiles 2020-03-29
Mma_argH; Mma_cya; Mma_gnd; Mma_murC; Mma_pta; Mma_purH; Mma_rpoB
Mycoplasma agalactiae 35 profiles 2020-03-29
dnaA; gltX; gyrB; metS; tufA
Mycoplasma bovis 185 profiles 2020-03-29
adh1; gltX; gpsA; gyrB; pta2; tdk; tkt
Mycoplasma flocculare 8 profiles 2020-03-29
adk; rpoB; tpiA
Mycoplasma gallisepticum#1 55 profiles 2020-03-29
atpG; dppC; DUF3196; lgT; mraW; plsC; ugpA
Mycoplasma gallisepticum#2 57 profiles 2020-03-29
atpG2; dnaA; fusA; rpoB; ruvB; uvrA
Mycoplasma hominis 23 profiles 2020-03-29
uvrA; gyrB; ftsY; tuf; gap
Mycoplasma hyopneumoniae 151 profiles 2020-03-29
adk; rpoB; tpiA
Mycoplasma hyorhinis 128 profiles 2020-03-29
dnaA; rpoB; gyrB; gltX; adk; gmk
Mycoplasma iowae 35 profiles 2020-03-29
dppC; ulaA; valS; rpoC; leuS; kdpA
Mycoplasma pneumoniae 37 profiles 2020-03-29
ppa; pgm; gyrB; gmk; glyA; atpA; arcC; adk
Mycoplasma synoviae 139 profiles 2020-03-29
adk; atpG; efp; gmk; nagC; ppa; recA
Neisseria spp. 15372 profiles 2020-03-29
abcZ; adk; aroE; fumC; gdh; pdhC; pgm
Orientia tsutsugamushi 98 profiles 2020-03-29
gpsA; mdh; nrdB; nuoF; ppdK; sucB; sucD
Ornithobacterium rhinotracheale 35 profiles 2020-03-29
adk; aroE; fumC; gdhA; mdh; pgi; pmi
Paenibacillus larvae 29 profiles 2020-03-29
glpF; sigF; glpT; Natrans; rpoB; ftsA; clpC
Pasteurella multocida#1 373 profiles 2020-03-29
RIRDC_adk; RIRDC_est; RIRDC_pmi; RIRDC_zwf; RIRDC_mdh; RIRDC_gdh; RIRDC_pgi
Pasteurella multocida#2 124 profiles 2020-03-29
mh_adk; mh_aroA; mh_deoD; mh_gdhA; mh_g6pd; mh_mdh; mh_pgi
Pediococcus pentosaceus 17 profiles 2020-03-29
gyrB; pyc; pgm; leuS; glnA; dalR; pgI
Photobacterium damselae 56 profiles 2020-03-29
glpF; gyrB; metG; pntA; pyrC; toxR
Piscirickettsia salmonis 24 profiles 2020-03-29
dnaK; efp; fumC; glyA; murG; rpoD; trpB
Porphyromonas gingivalis 138 profiles 2020-03-29
ftsQ; gpdxJ; hagB; mcmA; pepO; pga; recA
Propionibacterium acnes 153 profiles 2020-03-29
aroE; atpD; gmk; guaA; lepA; sodA; tly; CAMP2
Pseudomonas aeruginosa 3379 profiles 2020-03-29
acsA; aroE; guaA; mutL; nuoD; ppsA; trpE
Pseudomonas fluorescens 110 profiles 2020-03-29
glnS; gyrB; ileS; nuoD; recA; rpoB; rpoD
Pseudomonas putida 93 profiles 2020-03-29
argS; gyrB; ileS; nuoC; ppsA; recA; rpoB; rpoD
Rhodococcus spp. 39 profiles 2020-03-29
gapdh; tpi; mdh; icl; rpoB; recA; adk
Riemerella anatipestifer 44 profiles 2020-03-29
dnaB; groEL; gyrA; mdh; gluD; gpi; rpoB
Salmonella enterica 6719 profiles 2020-03-29
aroC; dnaN; hemD; hisD; purE; sucA; thrA
Saprolegnia parasitica 15 profiles 2020-03-29
ALTS1; COX1; GLUT; NAD1; RPB2; SHMT; TUBB
Sinorhizobium spp. 136 profiles 2020-03-29
asd; edd; gap; glnD; gnd; nuoE1; ordL2; recA; sucA; zwf
Staphylococcus aureus 5964 profiles 2020-03-29
arcC; aroE; glpF; gmk; pta; tpi; yqiL
Staphylococcus epidermidis 967 profiles 2020-03-29
arcC; aroE; gtr; mutS; pyrR; tpiA; yqiL
Staphylococcus haemolyticus 74 profiles 2020-03-29
arcC; SH_1200; hemH; leuB; SH1431; cfxE; Ribose_ABC
Staphylococcus hominis 57 profiles 2020-03-29
arcC; glpK; gtr; pta; tpiA; tuf
Staphylococcus lugdunensis 42 profiles 2020-03-29
aroE; dat; ddl; gmk; ldh; recA; yqiL
Staphylococcus pseudintermedius 1601 profiles 2020-03-29
ack; cpn60; fdh; pta; purA; sar; tuf
Stenotrophomonas maltophilia 478 profiles 2020-03-29
atpD; gapA; guaA; mutM; nuoD; ppsA; recA
Streptococcus agalactiae 1523 profiles 2020-03-29
adhP; pheS; atr; glnA; sdhA; glcK; tkt
Streptococcus bovis/equinus complex (SBSEC) 214 profiles 2020-03-29
ddl; gki; glnA; mutS; mutS2; pheS; proS; pyrE; thrS; tpi
Streptococcus canis 54 profiles 2020-03-29
gki; gtr; murI; mutS; recP; xpt; yqiZ
Streptococcus dysgalactiae equisimilis 522 profiles 2020-03-29
gki; gtr; murI; mutS; recP; xpt; atoB
Streptococcus gallolyticus 109 profiles 2020-03-29
aroE; glgB; nifS; p20; tkt; trpD; uvrA
Streptococcus oralis 78 profiles 2020-03-29
aroE; ddl; gdh; gki; hexB; recP; xpt
Streptococcus pneumoniae 15405 profiles 2020-03-29
aroE; gdh; gki; recP; spi; xpt; ddl
Streptococcus pyogenes 1223 profiles 2020-03-29
gki; gtr; murI; mutS; recP; xpt; yqiL
Streptococcus suis 1289 profiles 2020-03-29
aroA; cpn60; dpr; gki; mutS; recA; thrA
Streptococcus thermophilus 125 profiles 2020-03-29
ddlA; glcK; proA; ptsI; serB; tkt
Streptococcus thermophilus#2 119 profiles 2020-03-29
carB; clpX; dnaA; murC; murE; pepN; pepX; pyrG; recA; rpoB
Streptococcus uberis 1230 profiles 2020-03-29
arcC; ddl; gki; recP; tdk; tpi; yqiL
Streptococcus zooepidemicus 402 profiles 2020-03-29
arcC; nrdE; proS; spi; tdk; tpi; yqiL
Streptomyces spp 234 profiles 2020-03-29
16S; atpD; gyrB; recA; rpoB; trpB
Taylorella spp. 71 profiles 2020-03-29
gltA; gyrB; fh; shmt; tyrB; adk; txn
Tenacibaculum spp. 142 profiles 2020-03-29
atpA; dnaK; glyA; gyrB; infB; rlmN; tgt
Treponema pallidum 72 profiles 2020-03-29
TP0136; TP0548; TP0705
Trichomonas vaginalis 60 profiles 2020-03-29
TRYP; GLUT; FT2A; ALTS; DMRP; SHMT; M6PI
Ureaplasma spp. 164 profiles 2020-03-29
ftsH; rpL22; thrS; valS
Vibrio cholerae 1158 profiles 2020-03-29
adk; gyrB; mdh; metE; pntA; purM; pyrC
Vibrio cholerae#2 422 profiles 2020-03-29
asd; dnaE; lap; pgm; recA
Vibrio parahaemolyticus 2243 profiles 2020-03-29
dnaE; gyrB; recA; dtdS; pntA; pyrC; tnaA
Vibrio spp. 178 profiles 2020-03-29
gyrB; pyrH; recA; atpA
Vibrio tapetis 10 profiles 2020-03-29
atpA; fstZ; gapA; hsp60; pyrH; rctB; recA; rpoA; rpoD; topA
Vibrio vulnificus 530 profiles 2020-03-29
glp; gyrB; mdh; metG; purM; dtdS; lysA; pntA; pyrC; tnaA
Wolbachia 576 profiles 2020-03-29
gatB; coxA; hcpA; ftsZ; fbpA
Xylella fastidiosa 87 profiles 2020-03-29
leuA; petC; malF; cysG; holC; nuoL; gltT
Yersinia pseudotuberculosis 528 profiles 2020-03-29
adk; argA; aroA; glnA; thrA; tmk; trpE
Yersinia ruckeri 30 profiles 2020-03-29
glnA; gyrB; dnaJ; thrA; hsp60; recA
Yersinia spp. 170 profiles 2020-03-29
aarF; dfp; galR; glnS; hemA; rfaE; speA

MLST profiles and sequences

This page is provided as a service to enable the easy importation and linking of publicly-accessible MLST profile and allele data.

Databases hosted on other sites sometimes only make their sequences and profile definitions available as web pages, containing HTML markup code, that makes their automatic importation to offline tools difficult. Here we use a common format so that scripts can easily parse the data for local use. Links to the MLST databases that these lists are generated from are provided. These databases remain the definitive source and all ST and allele assignments are done by their respective curators.

Profiles are available in tab-delimited text format. Sequences are available in FASTA format.