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MLST allelic profiles and sequences

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The information in this table is available in XML format for automated parsing.

Database Data Retrieved
Achromobacter spp. 420 profiles 2018-08-17
nusA; rpoB; eno; gltB; lepA; nuoL; nrdA
Acinetobacter baumannii#1 1845 profiles 2018-08-17
Oxf_gltA; Oxf_gyrB; Oxf_gdhB; Oxf_recA; Oxf_cpn60; Oxf_gpi; Oxf_rpoD
Acinetobacter baumannii#2 1234 profiles 2018-08-17
Pas_cpn60; Pas_fusA; Pas_gltA; Pas_pyrG; Pas_recA; Pas_rplB; Pas_rpoB
Aeromonas spp. 556 profiles 2018-08-17
gyrB; groL; gltA; metG; ppsA; recA
Anaplasma phagocytophilum 147 profiles 2018-08-17
pheS; glyA; fumC; mdh; sucA; dnaN; atpA
Arcobacter spp. 717 profiles 2018-08-17
aspA; atpA; glnA; gltA; glyA; pgm; tkt
Aspergillus fumigatus 48 profiles 2018-08-17
ANX4; BGT1; CAT1; LIP; MAT1_2; SODB; ZRF2
Bacillus cereus 1665 profiles 2018-08-17
glp; gmk; ilv; pta; pur; pyc; tpi
Bacillus licheniformis 47 profiles 2018-08-17
adk; ccpA; recF; rpoB; spo0A; sucC
Bacillus subtilis 175 profiles 2018-08-17
glpF; ilvD; pta; purH; pycA; rpoD; tpiA
Bartonella bacilliformis 14 profiles 2018-08-17
ftsZ; flaA; ribC; rnpB; rpoB; bvrR; groEL
Bartonella henselae 33 profiles 2018-08-17
16S; batR; ftsZ; gltA; groEL; nlpD; ribC; rpoB
Bordetella spp. 85 profiles 2018-08-17
adk; fumC; glyA; tyrB; icd; pepA; pgm
Borrelia spp. 804 profiles 2018-08-17
clpA; clpX; nifS; pepX; pyrG; recG; rplB; uvrA
Brachyspira hampsonii 20 profiles 2018-08-17
Bha_adh; Bha_est; Bha_gdh; Bha_glpK; Bha_pgm; Bha_thi
Brachyspira hyodysenteriae 245 profiles 2018-08-17
Bhy_adh; Bhy_alp; Bhy_est; Bhy_gdh; Bhy_glpK; Bhy_pgm; Bhy_thi
Brachyspira intermedia 83 profiles 2018-08-17
Bin_adh; Bin_alp; Bin_est; Bin_gdh; Bin_glpK; Bin_pgm; Bin_thi
Brachyspira pilosicoli 124 profiles 2018-08-17
Bpi_adh; Bpi_alp; Bpi_est; Bpi_gdh; Bpi_glpK; Bpi_pgm; Bpi_thi
Brachyspira spp. 36 profiles 2018-08-17
Bra_adh; Bra_alp; Bra_est; Bra_gdh; Bra_glp; Bra_pgm; Bra_thi
Brucella spp. 79 profiles 2018-08-17
gap; aroA; glk; dnaK; gyrB; trpE; cobQ; int_hyp; omp25
Burkholderia cepacia complex 1529 profiles 2018-08-17
atpD; gltB; gyrB; recA; lepA; phaC; trpB
Burkholderia pseudomallei 1672 profiles 2018-08-17
ace; gltB; gmhD; lepA; lipA; narK; ndh
Campylobacter concisus/curvus 130 profiles 2018-08-17
Cco_aspA; Cco_atpA; Cco_glnA; Cco_gltA; Cco_glyA; Cco_ilvD; Cco_pgm
Campylobacter fetus 69 profiles 2018-08-17
Cfe_aspA; Cfe_glnA; Cfe_gltA; Cfe_glyA; Cfe_pgm; Cfe_tkt; Cfe_uncA
Campylobacter helveticus 9 profiles 2018-08-17
Che_aspA; Che_atpA; Che_glnA; Che_gltA; Che_glyA; Che_pgm; Che_tkt
Campylobacter hyointestinalis 133 profiles 2018-08-17
Chy_aspA; Chy_atpA; Chy_glnA; Chy_gltA; Chy_glyA; Chy_pgm; Chy_tkt
Campylobacter insulaenigrae 43 profiles 2018-08-17
Cin_aspA; Cin_atpA; Cin_glnA; Cin_glyA; Cin_pgi; Cin_pgm; Cin_tkt
Campylobacter jejuni 9317 profiles 2018-08-17
aspA; glnA; gltA; glyA; pgm; tkt; uncA
Campylobacter lanienae 171 profiles 2018-08-17
Cln_aspA; Cln_atpA; Cln_glnA; Cln_gltA; Cln_glyA; Cln_pgm; Cln_tkt
Campylobacter lari 158 profiles 2018-08-17
Cla_adk; Cla_atpA; Cla_glnA; Cla_glyA; Cla_pgi; Cla_pgm; Cla_tkt
Campylobacter sputorum 16 profiles 2018-08-17
Csp_aspA; Csp_atpA; Csp_glnA; Csp_gltA; Csp_glyA; Csp_pgm; Csp_tkt
Campylobacter upsaliensis 204 profiles 2018-08-17
Cup_adk; Cup_aspA; Cup_atpA; Cup_glnA; Cup_glyA; Cup_pgi; Cup_tkt
Candida albicans 3537 profiles 2018-08-17
AAT1a; ACC1; ADP1; MPIb; SYA1; VPS13; ZWF1b
Candida glabrata 95 profiles 2018-08-17
FKS; LEU2; NMT1; TRP1; UGP1; URA3
Candida krusei 188 profiles 2018-08-17
HIS3; LEU2; NMT1; TRP1; ADE2; LYS2D
Candida tropicalis 833 profiles 2018-08-17
ICL1; MDR1; SAPT2; SAPT4; XYR1; ZWF1a
Carnobacterium maltaromaticum 56 profiles 2018-08-17
dapE; ddlA; glpQ; ilvE; leuS; pyc; pyrE
Chlamydiales spp. 208 profiles 2018-08-17
gatA; oppA; hflX; gidA; enoA; hemN; fumC
Citrobacter freundii 394 profiles 2018-08-17
aspC; clpX; fadD; mdh; arcA; dnaG; lysP
Clonorchis sinensis 254 profiles 2018-08-17
Actin; Cox1; Cox3; Ef_1a; Its1; Nad4; Nad5; Tubulin
Clostridium botulinum 110 profiles 2018-08-17
aroE; mdh; aceK; oppB; rpoB; recA; hsp
Clostridium difficile 503 profiles 2018-08-17
adk; atpA; dxr; glyA; recA; sodA; tpi
Clostridium septicum 8 profiles 2018-08-17
ddl; dnaK; glpK; groEL; gyrA; recA; tpi
Corynebacterium diphtheriae 565 profiles 2018-08-17
atpA; dnaE; dnaK; fusA; leuA; odhA; rpoB
Cronobacter spp. 672 profiles 2018-08-17
atpD; fusA; glnS; gltB; gyrB; infB; pps
Dichelobacter nodosus 115 profiles 2018-08-17
dcd; dtdA; folK; recR; rlmH; rplI; tsaE
Edwardsiella spp. 18 profiles 2018-08-17
adk; atpD; dnaJ; gapA; glnA; hsp60; phoR; pyrG; rpoA; tuf
Enterobacter cloacae 1101 profiles 2018-08-17
dnaA; fusA; gyrB; leuS; pyrG; rplB; rpoB
Enterococcus faecalis 888 profiles 2018-08-17
gdh; gyd; pstS; gki; aroE; xpt; yqiL
Enterococcus faecium 1476 profiles 2018-08-17
atpA; ddl; gdh; purK; gyd; pstS; adk
Escherichia coli#1 7656 profiles 2018-08-17
adk; fumC; gyrB; icd; mdh; purA; recA
Escherichia coli#2 912 profiles 2018-08-17
dinB; icdA; pabB; polB; putP; trpA; trpB; uidA
Flavobacterium psychrophilum 194 profiles 2018-08-17
atpA; dnaK; fumC; gyrB; murG; trpB; tuf
Gallibacterium anatis 81 profiles 2018-08-17
adk; atpD; fumC; gyrB; infB; mdh; recN; thdF
Haemophilus influenzae 1904 profiles 2018-08-17
adk; atpG; frdB; fucK; mdh; pgi; recA
Haemophilus parasuis 316 profiles 2018-08-17
atpD; infB; mdh; rpoB; 6pgd; g3pd; frdB
Helicobacter cinaedi 19 profiles 2018-08-17
23S_rRNA; ppa; aspA; aroE; atpA; tkt; cdtB
Helicobacter pylori 3293 profiles 2018-08-17
atpA; efp; mutY; ppa; trpC; ureI; yphC
Helicobacter suis 138 profiles 2018-08-17
atpA; efp; mutY; ppa; trpC; ureAB; yphC
Kingella kingae 70 profiles 2018-08-17
abcZ; adk; aroE; cpn60; gdh; recA
Klebsiella aerogenes 140 profiles 2018-08-17
dnaA; fusA; gyrB; leuS; pryG; rplB; rpoB
Klebsiella oxytoca 200 profiles 2018-08-17
gapA; infB; mdh; pgi; phoE; rpoB; tonB
Klebsiella pneumoniae 3389 profiles 2018-08-17
gapA; infB; mdh; pgi; phoE; rpoB; tonB
Kudoa septempunctata 3 profiles 2018-08-17
cox1; rnl
Lactobacillus salivarius 25 profiles 2018-08-17
pstB; rpsB; nrdB; rpoA; parB
Leptospira spp. 202 profiles 2018-08-16
glmU; pntA; sucA; tpiA; pfkB; mreA; caiB
Leptospira spp.#2 106 profiles 2018-08-17
adk_2; glmU_2; icdA_2; lipL32_2; lipL41_2; mreA_2; pntA_2
Leptospira spp.#3 143 profiles 2018-08-17
adk_3; icdA_3; lipL41_3; rrs2_3; secY_3; lipL32_3
Listeria monocytogenes 1414 profiles 2018-08-17
abcZ; bglA; cat; dapE; dat; ldh; lhkA
Macrococcus canis 32 profiles 2018-08-17
ack; cpn60; fdh; pta; purA; sar; tuf
Macrococcus caseolyticus 31 profiles 2018-08-17
ack; cpn60; fdh; pta; purA; sar; tuf
Mannheimia haemolytica 51 profiles 2018-08-17
adk; aroE; deoD; gapDH; gnd; mdh; zwf
Melissococcus plutonius 35 profiles 2018-08-17
argE; galK; gbpB; purR
Moraxella catarrhalis 373 profiles 2018-08-17
abcZ; adk; efp; fumC; glyBeta; mutY; ppa; trpE
Mycobacterium abscessus 26 profiles 2018-08-17
Mab_argH; Mab_cya; Mab_gnd; Mab_murC; Mab_pta; Mab_purH; Mab_rpoB
Mycobacterium massiliense 12 profiles 2018-08-17
Mma_argH; Mma_cya; Mma_gnd; Mma_murC; Mma_pta; Mma_purH; Mma_rpoB
Mycoplasma agalactiae 34 profiles 2018-08-17
dnaA; gltX; gyrB; metS; tufA
Mycoplasma bovis 153 profiles 2018-08-17
adh1; gltX; gpsA; gyrB; pta2; tdk; tkt
Mycoplasma hyopneumoniae 117 profiles 2018-08-17
adk; rpoB; tpiA
Mycoplasma hyorhinis 82 profiles 2018-08-17
dnaA; rpoB; gyrB; gltX; adk; gmk
Mycoplasma iowae 23 profiles 2018-08-17
dppC; ulaA; valS; rpoC; leuS; kdpA
Mycoplasma pneumoniae 33 profiles 2018-08-17
ppa; pgm; gyrB; gmk; glyA; atpA; arcC; adk
Mycoplasma synoviae 88 profiles 2018-08-17
adk; atpG; efp; gmk; nagC; ppa; recA
Neisseria spp. 13815 profiles 2018-08-17
abcZ; adk; aroE; fumC; gdh; pdhC; pgm
Orientia tsutsugamushi 92 profiles 2018-08-17
gpsA; mdh; nrdF; nuoF; ppdK; sucB; sucD
Ornithobacterium rhinotracheale 35 profiles 2018-08-17
adk; aroE; fumC; gdhA; mdh; pgi; pmi
Paenibacillus larvae 24 profiles 2018-08-17
glpF; sigF; glpT; Natrans; rpoB; ftsA; clpC
Pasteurella multocida#1 350 profiles 2018-08-17
RIRDC_adk; RIRDC_est; RIRDC_pmi; RIRDC_zwf; RIRDC_mdh; RIRDC_gdh; RIRDC_pgi
Pasteurella multocida#2 75 profiles 2018-08-17
mh_adk; mh_aroA; mh_deoD; mh_gdhA; mh_g6pd; mh_mdh; mh_pgi
Pediococcus pentosaceus 17 profiles 2018-08-17
gyrB; pyc; pgm; leuS; glnA; dalR; pgI
Photobacterium damselae 56 profiles 2018-08-17
glpF; gyrB; metG; pntA; pyrC; toxR
Porphyromonas gingivalis 138 profiles 2018-08-17
ftsQ; gpdxJ; hagB; mcmA; pepO; pga; recA
Propionibacterium acnes 138 profiles 2018-08-17
aroE; atpD; gmk; guaA; lepA; sodA; tly; CAMP2
Pseudomonas aeruginosa 3113 profiles 2018-08-17
acs; aro; gua; mut; nuo; pps; trp
Pseudomonas fluorescens 106 profiles 2018-08-17
glnS; gyrB; ileS; nuoD; recA; rpoB; rpoD
Rhodococcus spp. 39 profiles 2018-08-17
gapdh; tpi; mdh; icl; rpoB; recA; adk
Riemerella anatipestifer 44 profiles 2018-08-17
dnaB; groEL; gyrA; mdh; gluD; gpi; rpoB
Salmonella enterica 4514 profiles 2018-08-17
aroC; dnaN; hemD; hisD; purE; sucA; thrA
Saprolegnia parasitica 15 profiles 2018-08-17
ALTS1; COX1; GLUT; NAD1; RPB2; SHMT; TUBB
Sinorhizobium spp. 136 profiles 2018-08-17
asd; edd; gap; glnD; gnd; nuoE1; ordL2; recA; sucA; zwf
Staphylococcus aureus 4895 profiles 2018-08-17
arcC; aroE; glpF; gmk; pta; tpi; yqiL
Staphylococcus epidermidis 777 profiles 2018-08-17
arcC; aroE; gtr; mutS; pyrR; tpiA; yqiL
Staphylococcus haemolyticus 48 profiles 2018-08-17
arcC; SH_1200; hemH; leuB; SH1431; cfxE; Ribose_ABC
Staphylococcus hominis 57 profiles 2018-08-17
arcC; glpK; gtr; pta; tpiA; tuf
Staphylococcus lugdunensis 42 profiles 2018-08-17
aroE; dat; ddl; gmk; ldh; recA; yqiL
Staphylococcus pseudintermedius 1095 profiles 2018-08-17
ack; cpn60; fdh; pta; purA; sar; tuf
Stenotrophomonas maltophilia 328 profiles 2018-08-17
atpD; gapA; guaA; mutM; nuoD; ppsA; recA
Streptococcus agalactiae 1313 profiles 2018-08-17
adhP; pheS; atr; glnA; sdhA; glcK; tkt
Streptococcus bovis/equinus complex (SBSEC) 214 profiles 2018-08-17
ddl; gki; glnA; mutS; mutS2; pheS; proS; pyrE; thrS; tpi
Streptococcus canis 38 profiles 2018-08-17
gki; gtr; murI; mutS; recP; xpt; yqiZ
Streptococcus dysgalactiae equisimilis 445 profiles 2018-08-17
gki; gtr; murI; mutS; recP; xpt; atoB
Streptococcus gallolyticus 109 profiles 2018-08-17
aroE; glgB; nifS; p20; tkt; trpD; uvrA
Streptococcus oralis 78 profiles 2018-08-17
aroE; ddl; gdh; gki; hexB; recP; xpt
Streptococcus pneumoniae 14145 profiles 2018-08-17
aroE; gdh; gki; recP; spi; xpt; ddl
Streptococcus pyogenes 1058 profiles 2018-08-17
gki; gtr; murI; mutS; recP; xpt; yqiL
Streptococcus suis 1056 profiles 2018-08-17
aroA; cpn60; dpr; gki; mutS; recA; thrA
Streptococcus thermophilus 125 profiles 2018-08-17
ddlA; glcK; proA; ptsI; serB; tkt
Streptococcus thermophilus#2 119 profiles 2018-08-17
carB; clpX; dnaA; murC; murE; pepN; pepX; pyrG; recA; rpoB
Streptococcus uberis 983 profiles 2018-08-17
arcC; ddl; gki; recP; tdk; tpi; yqiL
Streptococcus zooepidemicus 379 profiles 2018-08-17
arcC; nrdE; proS; spi; tdk; tpi; yqiL
Streptomyces spp 234 profiles 2018-08-17
16S; atpD; gyrB; recA; rpoB; trpB
Taylorella spp. 57 profiles 2018-08-17
gltA; gyrB; fh; shmt; tyrB; adk; txn
Tenacibaculum spp. 125 profiles 2018-08-17
atpA; dnaK; glyA; gyrB; infB; rlmN; tgt
Trichomonas vaginalis 60 profiles 2018-08-17
TRYP; GLUT; FT2A; ALTS; DMRP; SHMT; M6PI
Vibrio cholerae 695 profiles 2018-08-17
adk; gyrB; mdh; metE; pntA; purM; pyrC
Vibrio cholerae#2 594 profiles 2018-08-17
asd; dnaE; gmd; gyrB2; lap; pgm; recA
Vibrio parahaemolyticus 1930 profiles 2018-08-17
dnaE; gyrB; recA; dtdS; pntA; pyrC; tnaA
Vibrio spp. 149 profiles 2018-08-17
gyrB; pyrH; recA; atpA
Vibrio tapetis 10 profiles 2018-08-17
atpA; fstZ; gapA; hsp60; pyrH; rctB; recA; rpoA; rpoD; topA
Vibrio vulnificus 364 profiles 2018-08-17
glp; gyrB; mdh; metG; purM; dtdS; lysA; pntA; pyrC; tnaA
Wolbachia 491 profiles 2018-08-17
gatB; coxA; hcpA; ftsZ; fbpA
Xylella fastidiosa 85 profiles 2018-08-17
leuA; petC; malF; cysG; holC; nuoL; gltT
Yersinia pseudotuberculosis 342 profiles 2018-08-17
adk; argA; aroA; glnA; thrA; tmk; trpE
Yersinia ruckeri 30 profiles 2018-08-17
glnA; gyrB; dnaJ; thrA; hsp60; recA
Yersinia spp. 170 profiles 2018-08-17
aarF; dfp; galR; glnS; hemA; rfaE; speA

MLST profiles and sequences

This page is provided as a service to enable the easy importation and linking of publicly-accessible MLST profile and allele data.

Databases hosted on other sites sometimes only make their sequences and profile definitions available as web pages, containing HTML markup code, that makes their automatic importation to offline tools difficult. Here we use a common format so that scripts can easily parse the data for local use. Links to the MLST databases that these lists are generated from are provided. These databases remain the definitive source and all ST and allele assignments are done by their respective curators.

Profiles are available in tab-delimited text format. Sequences are available in FASTA format.