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MLST allelic profiles and sequences

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The information in this table is available in XML format for automated parsing.

DatabaseData
Achromobacter spp. profiles
nusA; rpoB; eno; gltB; lepA; nuoL; nrdA
Acinetobacter baumannii#1 profiles
Oxf_gltA; Oxf_gyrB; Oxf_gdhB; Oxf_recA; Oxf_cpn60; Oxf_gpi; Oxf_rpoD
Acinetobacter baumannii#2 profiles
Pas_cpn60; Pas_fusA; Pas_gltA; Pas_pyrG; Pas_recA; Pas_rplB; Pas_rpoB
Aeromonas spp. profiles
gyrB; groL; gltA; metG; ppsA; recA
Anaplasma phagocytophilum profiles
pheS; glyA; fumC; mdh; sucA; dnaN; atpA
Arcobacter spp. profiles
aspA; atpA; glnA; gltA; glyA; pgm; tkt
Aspergillus fumigatus profiles
ANX4; BGT1; CAT1; LIP; MAT1_2; SODB; ZRF2
Bacillus cereus profiles
glp; gmk; ilv; pta; pur; pyc; tpi
Bacillus licheniformis profiles
adk; ccpA; recF; rpoB; spo0A; sucC
Bacillus subtilis profiles
glpF; ilvD; pta; purH; pycA; rpoD; tpiA
Bartonella bacilliformis profiles
ftsZ; flaA; ribC; rnpB; rpoB; bvrR; groEL
Bartonella henselae profiles
16S; batR; ftsZ; gltA; groEL; nlpD; ribC; rpoB
Bartonella washoensis profiles
16S; ftsZ; gltA; groEL; ribC; rpoB
Bordetella spp. profiles
adk; fumC; glyA; tyrB; icd; pepA; pgm
Borrelia spp. profiles
clpA; clpX; nifS; pepX; pyrG; recG; rplB; uvrA
Brachyspira hampsonii profiles
Bha_adh; Bha_est; Bha_gdh; Bha_glpK; Bha_pgm; Bha_thi
Brachyspira hyodysenteriae profiles
Bhy_adh; Bhy_alp; Bhy_est; Bhy_gdh; Bhy_glpK; Bhy_pgm; Bhy_thi
Brachyspira intermedia profiles
Bin_adh; Bin_alp; Bin_est; Bin_gdh; Bin_glpK; Bin_pgm; Bin_thi
Brachyspira pilosicoli profiles
Bpi_adh; Bpi_alp; Bpi_est; Bpi_gdh; Bpi_glpK; Bpi_pgm; Bpi_thi
Brachyspira spp. profiles
Bra_adh; Bra_alp; Bra_est; Bra_gdh; Bra_glp; Bra_pgm; Bra_thi
Brucella spp. profiles
gap; aroA; glk; dnaK; gyrB; trpE; cobQ; int_hyp; omp25
Burkholderia cepacia complex profiles
atpD; gltB; gyrB; recA; lepA; phaC; trpB
Burkholderia pseudomallei profiles
ace; gltB; gmhD; lepA; lipA; narK; ndh
Campylobacter concisus/curvus profiles
Cco_aspA; Cco_atpA; Cco_glnA; Cco_gltA; Cco_glyA; Cco_ilvD; Cco_pgm
Campylobacter fetus profiles
Cfe_aspA; Cfe_glnA; Cfe_gltA; Cfe_glyA; Cfe_pgm; Cfe_tkt; Cfe_uncA
Campylobacter helveticus profiles
Che_aspA; Che_atpA; Che_glnA; Che_gltA; Che_glyA; Che_pgm; Che_tkt
Campylobacter hyointestinalis profiles
Chy_aspA; Chy_atpA; Chy_glnA; Chy_gltA; Chy_glyA; Chy_pgm; Chy_tkt
Campylobacter insulaenigrae profiles
Cin_aspA; Cin_atpA; Cin_glnA; Cin_glyA; Cin_pgi; Cin_pgm; Cin_tkt
Campylobacter jejuni profiles
aspA; glnA; gltA; glyA; pgm; tkt; uncA
Campylobacter lanienae profiles
Cln_aspA; Cln_atpA; Cln_glnA; Cln_gltA; Cln_glyA; Cln_pgm; Cln_tkt
Campylobacter lari profiles
Cla_adk; Cla_atpA; Cla_glnA; Cla_glyA; Cla_pgi; Cla_pgm; Cla_tkt
Campylobacter sputorum profiles
Csp_aspA; Csp_atpA; Csp_glnA; Csp_gltA; Csp_glyA; Csp_pgm; Csp_tkt
Campylobacter upsaliensis profiles
Cup_adk; Cup_aspA; Cup_atpA; Cup_glnA; Cup_glyA; Cup_pgi; Cup_tkt
Candida albicans profiles
AAT1a; ACC1; ADP1; MPIb; SYA1; VPS13; ZWF1b
Candida glabrata profiles
FKS; LEU2; NMT1; TRP1; UGP1; URA3
Candida krusei profiles
HIS3; LEU2; NMT1; TRP1; ADE2; LYS2D
Candida tropicalis profiles
ICL1; MDR1; SAPT2; SAPT4; XYR1; ZWF1a
Candidatus Liberibacter solanacearum profiles
adk; atpA; fbpA; ftsZ; glyA; groEL; gyrB
Carnobacterium maltaromaticum profiles
dapE; ddlA; glpQ; ilvE; leuS; pyc; pyrE
Chlamydiales spp. profiles
gatA; oppA; hflX; gidA; enoA; hemN; fumC
Citrobacter freundii profiles
aspC; clpX; fadD; mdh; arcA; dnaG; lysP
Clonorchis sinensis profiles
Actin; Cox1; Cox3; Ef_1a; Its1; Nad4; Nad5; Tubulin
Clostridioides difficile profiles
adk; atpA; dxr; glyA; recA; sodA; tpi
Clostridium botulinum profiles
aroE; mdh; aceK; oppB; rpoB; recA; hsp
Clostridium septicum profiles
ddl; dnaK; glpK; groEL; gyrA; recA; tpi
Corynebacterium diphtheriae profiles
atpA; dnaE; dnaK; fusA; leuA; odhA; rpoB
Cronobacter spp. profiles
atpD; fusA; glnS; gltB; gyrB; infB; pps
Dichelobacter nodosus profiles
dcd; dtdA; folK; recR; rlmH; rplI; tsaE
Edwardsiella spp. profiles
adk; atpD; dnaJ; gapA; glnA; hsp60; phoR; pyrG; rpoA; tuf
Enterobacter cloacae profiles
dnaA; fusA; gyrB; leuS; pyrG; rplB; rpoB
Enterococcus faecalis profiles
gdh; gyd; pstS; gki; aroE; xpt; yqiL
Enterococcus faecium profiles
atpA; ddl; gdh; purK; gyd; pstS; adk
Escherichia coli#1 profiles
adk; fumC; gyrB; icd; mdh; purA; recA
Escherichia coli#2 profiles
dinB; icdA; pabB; polB; putP; trpA; trpB; uidA
Flavobacterium psychrophilum profiles
atpA; dnaK; fumC; gyrB; murG; trpB; tuf
Gallibacterium anatis profiles
adk; atpD; fumC; gyrB; infB; mdh; recN; thdF
Haemophilus influenzae profiles
adk; atpG; frdB; fucK; mdh; pgi; recA
Haemophilus parasuis profiles
atpD; infB; mdh; rpoB; 6pgd; g3pd; frdB
Helicobacter cinaedi profiles
23S_rRNA; ppa; aspA; aroE; atpA; tkt; cdtB
Helicobacter pylori profiles
atpA; efp; mutY; ppa; trpC; ureI; yphC
Helicobacter suis profiles
atpA; efp; mutY; ppa; trpC; ureAB; yphC
Kingella kingae profiles
abcZ; adk; aroE; cpn60; gdh; recA
Klebsiella aerogenes profiles
dnaA; fusA; gyrB; leuS; pryG; rplB; rpoB
Klebsiella oxytoca profiles
gapA; infB; mdh; pgi; phoE; rpoB; tonB
Klebsiella pneumoniae profiles
gapA; infB; mdh; pgi; phoE; rpoB; tonB
Kudoa septempunctata profiles
cox1; rnl
Lactobacillus salivarius profiles
pstB; rpsB; nrdB; rpoA; parB
Leptospira spp. profiles
glmU_1; pntA_1; sucA_1; tpiA_1; pfkB_1; mreA_1; caiB_1
Leptospira spp.#2 profiles
adk_2; glmU_2; icdA_2; lipL32_2; lipL41_2; mreA_2; pntA_2
Leptospira spp.#3 profiles
adk_3; icdA_3; lipL41_3; rrs2_3; secY_3; lipL32_3
Listeria monocytogenes profiles
abcZ; bglA; cat; dapE; dat; ldh; lhkA
Macrococcus canis profiles
ack; cpn60; fdh; pta; purA; sar; tuf
Macrococcus caseolyticus profiles
ack; cpn60; fdh; pta; purA; sar; tuf
Mannheimia haemolytica profiles
adk; aroE; deoD; gapDH; gnd; mdh; zwf
Melissococcus plutonius profiles
argE; galK; gbpB; purR
Moraxella catarrhalis profiles
abcZ; adk; efp; fumC; glyBeta; mutY; ppa; trpE
Mycobacteria spp. profiles
S14Z; L35; S19; L19; S12; S8; L16; S7
Mycobacterium abscessus profiles
Mab_argH; Mab_cya; Mab_gnd; Mab_murC; Mab_pta; Mab_purH; Mab_rpoB
Mycobacterium massiliense profiles
Mma_argH; Mma_cya; Mma_gnd; Mma_murC; Mma_pta; Mma_purH; Mma_rpoB
Mycoplasma agalactiae profiles
dnaA; gltX; gyrB; metS; tufA
Mycoplasma bovis profiles
dnaA; gltX; gpsA; gyrB; pta2; tdk; tkt
Mycoplasma flocculare profiles
adk; rpoB; tpiA
Mycoplasma gallisepticum#1 profiles
atpG; dppC; DUF3196; lgT; mraW; plsC; ugpA
Mycoplasma gallisepticum#2 profiles
atpG2; dnaA; fusA; rpoB; ruvB; uvrA
Mycoplasma hominis profiles
uvrA; gyrB; ftsY; tuf; gap
Mycoplasma hyopneumoniae profiles
adk; rpoB; tpiA
Mycoplasma hyorhinis profiles
dnaA; rpoB; gyrB; gltX; adk; gmk
Mycoplasma iowae profiles
dppC; ulaA; valS; rpoC; leuS; kdpA
Mycoplasma pneumoniae profiles
ppa; pgm; gyrB; gmk; glyA; atpA; arcC; adk
Mycoplasma synoviae profiles
adk; atpG; efp; gmk; nagC; ppa; recA
Neisseria spp. profiles
abcZ; adk; aroE; fumC; gdh; pdhC; pgm
Orientia tsutsugamushi profiles
gpsA; mdh; nrdB; nuoF; ppdK; sucB; sucD
Ornithobacterium rhinotracheale profiles
adk; aroE; fumC; gdhA; mdh; pgi; pmi
Paenibacillus larvae profiles
glpF; sigF; glpT; Natrans; rpoB; ftsA; clpC
Pasteurella multocida#1 profiles
RIRDC_adk; RIRDC_est; RIRDC_pmi; RIRDC_zwf; RIRDC_mdh; RIRDC_gdh; RIRDC_pgi
Pasteurella multocida#2 profiles
mh_adk; mh_aroA; mh_deoD; mh_gdhA; mh_g6pd; mh_mdh; mh_pgi
Pediococcus pentosaceus profiles
gyrB; pyc; pgm; leuS; glnA; dalR; pgI
Photobacterium damselae profiles
glpF; gyrB; metG; pntA; pyrC; toxR
Piscirickettsia salmonis profiles
dnaK; efp; fumC; glyA; murG; rpoD; trpB
Porphyromonas gingivalis profiles
ftsQ; gpdxJ; hagB; mcmA; pepO; pga; recA
Propionibacterium acnes profiles
aroE; atpD; gmk; guaA; lepA; sodA; tly; CAMP2
Pseudomonas aeruginosa profiles
acsA; aroE; guaA; mutL; nuoD; ppsA; trpE
Pseudomonas fluorescens profiles
glnS; gyrB; ileS; nuoD; recA; rpoB; rpoD
Pseudomonas putida profiles
argS; gyrB; ileS; nuoC; ppsA; recA; rpoB; rpoD
Rhodococcus spp. profiles
gapdh; tpi; mdh; icl; rpoB; recA; adk
Riemerella anatipestifer profiles
dnaB; groEL; gyrA; mdh; gluD; gpi; rpoB
Salmonella enterica profiles
aroC; dnaN; hemD; hisD; purE; sucA; thrA
Saprolegnia parasitica profiles
ALTS1; COX1; GLUT; NAD1; RPB2; SHMT; TUBB
Sinorhizobium spp. profiles
asd; edd; gap; glnD; gnd; nuoE1; ordL2; recA; sucA; zwf
Staphylococcus aureus profiles
arcC; aroE; glpF; gmk; pta; tpi; yqiL
Staphylococcus epidermidis profiles
arcC; aroE; gtr; mutS; pyrR; tpiA; yqiL
Staphylococcus haemolyticus profiles
arcC; SH_1200; hemH; leuB; SH1431; cfxE; Ribose_ABC
Staphylococcus hominis profiles
arcC; glpK; gtr; pta; tpiA; tuf
Staphylococcus lugdunensis profiles
aroE; dat; ddl; gmk; ldh; recA; yqiL
Staphylococcus pseudintermedius profiles
ack; cpn60; fdh; pta; purA; sar; tuf
Stenotrophomonas maltophilia profiles
atpD; gapA; guaA; mutM; nuoD; ppsA; recA
Streptococcus agalactiae profiles
adhP; pheS; atr; glnA; sdhA; glcK; tkt
Streptococcus bovis/equinus complex (SBSEC) profiles
ddl; gki; glnA; mutS; mutS2; pheS; proS; pyrE; thrS; tpi
Streptococcus canis profiles
gki; gtr; murI; mutS; recP; xpt; yqiZ
Streptococcus dysgalactiae equisimilis profiles
gki; gtr; murI; mutS; recP; xpt; atoB
Streptococcus gallolyticus profiles
aroE; glgB; nifS; p20; tkt; trpD; uvrA
Streptococcus oralis profiles
aroE; ddl; gdh; gki; hexB; recP; xpt
Streptococcus pneumoniae profiles
aroE; gdh; gki; recP; spi; xpt; ddl
Streptococcus pyogenes profiles
gki; gtr; murI; mutS; recP; xpt; yqiL
Streptococcus suis profiles
aroA; cpn60; dpr; gki; mutS; recA; thrA
Streptococcus thermophilus profiles
ddlA; glcK; proA; ptsI; serB; tkt
Streptococcus thermophilus#2 profiles
carB; clpX; dnaA; murC; murE; pepN; pepX; pyrG; recA; rpoB
Streptococcus uberis profiles
arcC; ddl; gki; recP; tdk; tpi; yqiL
Streptococcus zooepidemicus profiles
arcC; nrdE; proS; spi; tdk; tpi; yqiL
Streptomyces spp profiles
16S; atpD; gyrB; recA; rpoB; trpB
Taylorella spp. profiles
gltA; gyrB; fh; shmt; tyrB; adk; txn
Tenacibaculum spp. profiles
atpA; dnaK; glyA; gyrB; infB; rlmN; tgt
Treponema pallidum profiles
TP0136; TP0548; TP0705
Trichomonas vaginalis profiles
TRYP; GLUT; FT2A; ALTS; DMRP; SHMT; M6PI
Ureaplasma spp. profiles
ftsH; rpL22; thrS; valS
Vibrio cholerae profiles
adk; gyrB; mdh; metE; pntA; purM; pyrC
Vibrio cholerae#2 profiles
asd; dnaE; lap; pgm; recA
Vibrio parahaemolyticus profiles
dnaE; gyrB; recA; dtdS; pntA; pyrC; tnaA
Vibrio spp. profiles
gyrB; pyrH; recA; atpA
Vibrio tapetis profiles
atpA; fstZ; gapA; hsp60; pyrH; rctB; recA; rpoA; rpoD; topA
Vibrio vulnificus profiles
glp; gyrB; mdh; metG; purM; dtdS; lysA; pntA; pyrC; tnaA
Wolbachia profiles
gatB; coxA; hcpA; ftsZ; fbpA
Xylella fastidiosa profiles
leuA; petC; malF; cysG; holC; nuoL; gltT
Yersinia pseudotuberculosis profiles
adk; argA; aroA; glnA; thrA; tmk; trpE
Yersinia ruckeri profiles
glnA; gyrB; dnaJ; thrA; hsp60; recA
Yersinia spp. profiles
aarF; dfp; galR; glnS; hemA; rfaE; speA

MLST profiles and sequences

This page is provided as a service to enable the easy importation and linking of publicly-accessible MLST profile and allele data.

Databases hosted on other sites sometimes only make their sequences and profile definitions available as web pages, containing HTML markup code, that makes their automatic importation to offline tools difficult. Here we use a common format so that scripts can easily parse the data for local use. Links to the MLST databases that these lists are generated from are provided. These databases remain the definitive source and all ST and allele assignments are done by their respective curators.

Profiles are available in tab-delimited text format. Sequences are available in FASTA format.