MLST allelic profiles and sequences

This page contains download links to alleles and profiles that define classic MLST schemes. Where these are hosted on PubMLST, they represent a small subset of the data hosted, all of which is available via the application programming interface (API). A few of the schemes are hosted at Pasteur and the links point to their API.

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The information in this table is available in XML format for automated parsing.

DatabaseDownload
Achromobacter spp. profiles; nusA; rpoB; eno; gltB; lepA; nuoL; nrdA
Acinetobacter baumannii#1 profiles; Oxf_gltA; Oxf_gyrB; Oxf_gdhB; Oxf_recA; Oxf_cpn60; Oxf_gpi; Oxf_rpoD
Acinetobacter baumannii#2 profiles; Pas_cpn60; Pas_fusA; Pas_gltA; Pas_pyrG; Pas_recA; Pas_rplB; Pas_rpoB
Aeromonas spp. profiles; gyrB; groL; gltA; metG; ppsA; recA
Aggregatibacter actinomycetemcomitans profiles; adk; atpG; frdB; mdh; pgi; recA; zwf
Anaplasma phagocytophilum profiles; pheS; glyA; fumC; mdh; sucA; dnaN; atpA
Arcobacter spp. profiles; aspA; atpA; glnA; gltA; glyA; pgm; tkt
Aspergillus fumigatus profiles; ANX4; BGT1; CAT1; LIP; MAT1_2; SODB; ZRF2
Bacillus cereus profiles; glp; gmk; ilv; pta; pur; pyc; tpi
Bacillus licheniformis profiles; adk; ccpA; recF; rpoB; spo0A; sucC
Bacillus subtilis profiles; glpF; ilvD; pta; purH; pycA; rpoD; tpiA
Bartonella bacilliformis profiles; ftsZ; flaA; ribC; rnpB; rpoB; bvrR; groEL
Bartonella henselae profiles; 16S; batR; ftsZ; gltA; groEL; nlpD; ribC; rpoB
Bartonella washoensis profiles; 16S; ftsZ; gltA; groEL; ribC; rpoB
Bordetella spp. profiles; adk; fumC; glyA; tyrB; icd; pepA; pgm
Borrelia spp. profiles; clpA; clpX; nifS; pepX; pyrG; recG; rplB; uvrA
Brachyspira hampsonii profiles; Bha_adh; Bha_est; Bha_gdh; Bha_glpK; Bha_pgm; Bha_thi
Brachyspira hyodysenteriae profiles; Bhy_adh; Bhy_alp; Bhy_est; Bhy_gdh; Bhy_glpK; Bhy_pgm; Bhy_thi
Brachyspira intermedia profiles; Bin_adh; Bin_alp; Bin_est; Bin_gdh; Bin_glpK; Bin_pgm; Bin_thi
Brachyspira pilosicoli profiles; Bpi_adh; Bpi_alp; Bpi_est; Bpi_gdh; Bpi_glpK; Bpi_pgm; Bpi_thi
Brachyspira spp. profiles; Bra_adh; Bra_alp; Bra_est; Bra_gdh; Bra_glp; Bra_pgm; Bra_thi
Brucella spp. profiles; gap; aroA; glk; dnaK; gyrB; trpE; cobQ; int_hyp; omp25
Burkholderia cepacia complex profiles; atpD; gltB; gyrB; recA; lepA; phaC; trpB
Burkholderia pseudomallei profiles; ace; gltB; gmhD; lepA; lipA; narK; ndh
Campylobacter concisus/curvus profiles; Cco_aspA; Cco_atpA; Cco_glnA; Cco_gltA; Cco_glyA; Cco_ilvD; Cco_pgm
Campylobacter fetus profiles; Cfe_aspA; Cfe_glnA; Cfe_gltA; Cfe_glyA; Cfe_pgm; Cfe_tkt; Cfe_uncA
Campylobacter helveticus profiles; Che_aspA; Che_atpA; Che_glnA; Che_gltA; Che_glyA; Che_pgm; Che_tkt
Campylobacter hyointestinalis profiles; Chy_aspA; Chy_atpA; Chy_glnA; Chy_gltA; Chy_glyA; Chy_pgm; Chy_tkt
Campylobacter insulaenigrae profiles; Cin_aspA; Cin_atpA; Cin_glnA; Cin_glyA; Cin_pgi; Cin_pgm; Cin_tkt
Campylobacter jejuni profiles; aspA; glnA; gltA; glyA; pgm; tkt; uncA
Campylobacter lanienae profiles; Cln_aspA; Cln_atpA; Cln_glnA; Cln_gltA; Cln_glyA; Cln_pgm; Cln_tkt
Campylobacter lari profiles; Cla_adk; Cla_atpA; Cla_glnA; Cla_glyA; Cla_pgi; Cla_pgm; Cla_tkt
Campylobacter sputorum profiles; Csp_aspA; Csp_atpA; Csp_glnA; Csp_gltA; Csp_glyA; Csp_pgm; Csp_tkt
Campylobacter upsaliensis profiles; Cup_adk; Cup_aspA; Cup_atpA; Cup_glnA; Cup_glyA; Cup_pgi; Cup_tkt
Candida albicans profiles; AAT1a; ACC1; ADP1; MPIb; SYA1; VPS13; ZWF1b
Candida glabrata profiles; FKS; LEU2; NMT1; TRP1; UGP1; URA3
Candida krusei profiles; HIS3; LEU2; NMT1; TRP1; ADE2; LYS2D
Candida tropicalis profiles; ICL1; MDR1; SAPT2; SAPT4; XYR1; ZWF1a
Candidatus Liberibacter solanacearum profiles; adk; atpA; fbpA; ftsZ; glyA; groEL; gyrB
Carnobacterium maltaromaticum profiles; dapE; ddlA; glpQ; ilvE; leuS; pyc; pyrE
Chlamydiales spp. profiles; gatA; oppA; hflX; gidA; enoA; hemN; fumC
Citrobacter freundii profiles; aspC; clpX; fadD; mdh; arcA; dnaG; lysP
Clonorchis sinensis profiles; Actin; Cox1; Cox3; Ef_1a; Its1; Nad4; Nad5; Tubulin
Clostridioides difficile profiles; adk; atpA; dxr; glyA; recA; sodA; tpi
Clostridium botulinum profiles; aroE; mdh; aceK; oppB; rpoB; recA; hsp
Clostridium perfringens profiles; colA; groEL; sodA; plc; gyrB; sigK; pgk; nadA
Clostridium septicum profiles; ddl; dnaK; glpK; groEL; gyrA; recA; tpi
Corynebacterium diphtheriae profiles; atpA; dnaE; dnaK; fusA; leuA; odhA; rpoB
Cronobacter spp. profiles; atpD; fusA; glnS; gltB; gyrB; infB; pps
Dichelobacter nodosus profiles; dcd; dtdA; folK; recR; rlmH; rplI; tsaE
Edwardsiella spp. profiles; adk; atpD; dnaJ; gapA; glnA; hsp60; phoR; pyrG; rpoA; tuf
Enterobacter cloacae profiles; dnaA; fusA; gyrB; leuS; pyrG; rplB; rpoB
Enterococcus faecalis profiles; gdh; gyd; pstS; gki; aroE; xpt; yqiL
Enterococcus faecium profiles; atpA; ddl; gdh; purK; gyd; pstS; adk
Escherichia coli#1 profiles; adk; fumC; gyrB; icd; mdh; purA; recA
Escherichia coli#2 profiles; dinB; icdA; pabB; polB; putP; trpA; trpB; uidA
Flavobacterium psychrophilum profiles; atpA; dnaK; fumC; gyrB; murG; trpB; tuf
Gallibacterium anatis profiles; adk; atpD; fumC; gyrB; infB; mdh; recN; thdF
Geotrichum spp. profiles; NUP116; URA1; URA3; SAPT4; PLB3
Glaesserella parasuis profiles; atpD; infB; mdh; rpoB; 6pgd; g3pd; frdB
Haemophilus influenzae profiles; adk; atpG; frdB; fucK; mdh; pgi; recA
Helicobacter cinaedi profiles; 23S_rRNA; ppa; aspA; aroE; atpA; tkt; cdtB
Helicobacter pylori profiles; atpA; efp; mutY; ppa; trpC; ureI; yphC
Helicobacter suis profiles; atpA; efp; mutY; ppa; trpC; ureAB; yphC
Kingella kingae profiles; abcZ; adk; aroE; cpn60; gdh; recA
Klebsiella aerogenes profiles; dnaA; fusA; gyrB; leuS; pryG; rplB; rpoB
Klebsiella oxytoca profiles; gapA; infB; mdh; pgi; phoE; rpoB; tonB
Klebsiella pneumoniae profiles; gapA; infB; mdh; pgi; phoE; rpoB; tonB
Kudoa septempunctata profiles; cox1; rnl
Lactobacillus salivarius profiles; pstB; rpsB; nrdB; rpoA; parB
Leptospira spp. profiles; glmU_1; pntA_1; sucA_1; tpiA_1; pfkB_1; mreA_1; caiB_1
Leptospira spp.#2 profiles; adk_2; glmU_2; icdA_2; lipL32_2; lipL41_2; mreA_2; pntA_2
Leptospira spp.#3 profiles; adk_3; icdA_3; lipL41_3; rrs2_3; secY_3; lipL32_3
Listeria monocytogenes profiles; abcZ; bglA; cat; dapE; dat; ldh; lhkA
Macrococcus canis profiles; ack; cpn60; fdh; pta; purA; sar; tuf
Macrococcus caseolyticus profiles; ack; cpn60; fdh; pta; purA; sar; tuf
Mannheimia haemolytica profiles; adk; aroE; deoD; gapDH; gnd; mdh; zwf
Melissococcus plutonius profiles; argE; galK; gbpB; purR
Moraxella catarrhalis profiles; abcZ; adk; efp; fumC; glyBeta; mutY; ppa; trpE
Mycobacteria spp. profiles; S14Z; L35; S19; L19; S12; S8; L16; S7
Mycobacterium abscessus profiles; Mab_argH; Mab_cya; Mab_gnd; Mab_murC; Mab_pta; Mab_purH; Mab_rpoB
Mycobacterium massiliense profiles; Mma_argH; Mma_cya; Mma_gnd; Mma_murC; Mma_pta; Mma_purH; Mma_rpoB
Mycoplasma agalactiae profiles; dnaA; gltX; gyrB; metS; tufA
Mycoplasma anserisalpingitidis profiles; atpG; fusA; pgiB; plsY; uvrA
Mycoplasma bovis profiles; dnaA; gltX; gpsA; gyrB; pta2; tdk; tkt
Mycoplasma flocculare profiles; adk; rpoB; tpiA
Mycoplasma gallisepticum#1 profiles; atpG; dppC; DUF3196; lgT; mraW; plsC; ugpA
Mycoplasma gallisepticum#2 profiles; atpG2; dnaA; fusA; rpoB; ruvB; uvrA
Mycoplasma hominis profiles; uvrA; gyrB; ftsY; tuf; gap
Mycoplasma hyopneumoniae profiles; adk; rpoB; tpiA
Mycoplasma hyorhinis profiles; dnaA; rpoB; gyrB; gltX; adk; gmk
Mycoplasma iowae profiles; dppC; ulaA; valS; rpoC; leuS; kdpA
Mycoplasma pneumoniae profiles; ppa; pgm; gyrB; gmk; glyA; atpA; arcC; adk
Mycoplasma synoviae profiles; adk; atpG; efp; gmk; nagC; ppa; recA
Neisseria spp. profiles; abcZ; adk; aroE; fumC; gdh; pdhC; pgm
Orientia tsutsugamushi profiles; gpsA; mdh; nrdB; nuoF; ppdK; sucB; sucD
Ornithobacterium rhinotracheale profiles; adk; aroE; fumC; gdhA; mdh; pgi; pmi
Paenibacillus larvae profiles; glpF; sigF; glpT; Natrans; rpoB; ftsA; clpC
Pasteurella multocida#1 profiles; RIRDC_adk; RIRDC_est; RIRDC_pmi; RIRDC_zwf; RIRDC_mdh; RIRDC_gdh; RIRDC_pgi
Pasteurella multocida#2 profiles; mh_adk; mh_aroA; mh_deoD; mh_gdhA; mh_g6pd; mh_mdh; mh_pgi
Pediococcus pentosaceus profiles; gyrB; pyc; pgm; leuS; glnA; dalR; pgI
Photobacterium damselae profiles; glpF; gyrB; metG; pntA; pyrC; toxR
Piscirickettsia salmonis profiles; dnaK; efp; fumC; glyA; murG; rpoD; trpB
Porphyromonas gingivalis profiles; ftsQ; gpdxJ; hagB; mcmA; pepO; pga; recA
Propionibacterium acnes profiles; aroE; atpD; gmk; guaA; lepA; sodA; tly; CAMP2
Pseudomonas aeruginosa profiles; acsA; aroE; guaA; mutL; nuoD; ppsA; trpE
Pseudomonas fluorescens profiles; glnS; gyrB; ileS; nuoD; recA; rpoB; rpoD
Pseudomonas putida profiles; argS; gyrB; ileS; nuoC; ppsA; recA; rpoB; rpoD
Rhodococcus spp. profiles; gapdh; tpi; mdh; icl; rpoB; recA; adk
Riemerella anatipestifer profiles; dnaB; groEL; gyrA; mdh; gluD; gpi; rpoB
Salmonella enterica profiles; aroC; dnaN; hemD; hisD; purE; sucA; thrA
Saprolegnia parasitica profiles; ALTS1; COX1; GLUT; NAD1; RPB2; SHMT; TUBB
Shewanella spp. profiles; 16S_rRNA; adk; atpB; guaA; gyrB; mdh; recA; rpoS
Sinorhizobium spp. profiles; asd; edd; gap; glnD; gnd; nuoE1; ordL2; recA; sucA; zwf
Staphylococcus aureus profiles; arcC; aroE; glpF; gmk; pta; tpi; yqiL
Staphylococcus chromogenes profiles; arcC; hutU; fumC; dnaJ; glpF; menF; pta
Staphylococcus epidermidis profiles; arcC; aroE; gtr; mutS; pyrR; tpiA; yqiL
Staphylococcus haemolyticus profiles; arcC; SH_1200; hemH; leuB; SH1431; cfxE; Ribose_ABC
Staphylococcus hominis profiles; arcC; glpK; gtr; pta; tpiA; tuf
Staphylococcus lugdunensis profiles; aroE; dat; ddl; gmk; ldh; recA; yqiL
Staphylococcus pseudintermedius profiles; ack; cpn60; fdh; pta; purA; sar; tuf
Stenotrophomonas maltophilia profiles; atpD; gapA; guaA; mutM; nuoD; ppsA; recA
Streptococcus agalactiae profiles; adhP; pheS; atr; glnA; sdhA; glcK; tkt
Streptococcus bovis/equinus complex (SBSEC) profiles; ddl; gki; glnA; mutS; mutS2; pheS; proS; pyrE; thrS; tpi
Streptococcus canis profiles; gki; gtr; murI; mutS; recP; xpt; yqiZ
Streptococcus dysgalactiae equisimilis profiles; gki; gtr; murI; mutS; recP; xpt; atoB
Streptococcus gallolyticus profiles; aroE; glgB; nifS; p20; tkt; trpD; uvrA
Streptococcus oralis profiles; aroE; ddl; gdh; gki; hexB; recP; xpt
Streptococcus pneumoniae profiles; aroE; gdh; gki; recP; spi; xpt; ddl
Streptococcus pyogenes profiles; gki; gtr; murI; mutS; recP; xpt; yqiL
Streptococcus suis profiles; aroA; cpn60; dpr; gki; mutS; recA; thrA
Streptococcus thermophilus profiles; ddlA; glcK; proA; ptsI; serB; tkt
Streptococcus thermophilus#2 profiles; carB; clpX; dnaA; murC; murE; pepN; pepX; pyrG; recA; rpoB
Streptococcus uberis profiles; arcC; ddl; gki; recP; tdk; tpi; yqiL
Streptococcus zooepidemicus profiles; arcC; nrdE; proS; spi; tdk; tpi; yqiL
Streptomyces spp profiles; 16S; atpD; gyrB; recA; rpoB; trpB
Taylorella spp. profiles; gltA; gyrB; fh; shmt; tyrB; adk; txn
Tenacibaculum spp. profiles; atpA; dnaK; glyA; gyrB; infB; rlmN; tgt
Treponema pallidum profiles; TP0136; TP0548; TP0705
Trichomonas vaginalis profiles; TRYP; GLUT; FT2A; ALTS; DMRP; SHMT; M6PI
Ureaplasma spp. profiles; ftsH; rpL22; thrS; valS
Vibrio cholerae profiles; adk; gyrB; mdh; metE; pntA; purM; pyrC
Vibrio cholerae#2 profiles; asd; dnaE; lap; pgm; recA
Vibrio parahaemolyticus profiles; dnaE; gyrB; recA; dtdS; pntA; pyrC; tnaA
Vibrio spp. profiles; gyrB; pyrH; recA; atpA
Vibrio tapetis profiles; atpA; fstZ; gapA; hsp60; pyrH; rctB; recA; rpoA; rpoD; topA
Vibrio vulnificus profiles; glp; gyrB; mdh; metG; purM; dtdS; lysA; pntA; pyrC; tnaA
Wolbachia profiles; gatB; coxA; hcpA; ftsZ; fbpA
Xylella fastidiosa profiles; leuA; petC; malF; cysG; holC; nuoL; gltT
Yersinia pseudotuberculosis profiles; adk; argA; aroA; glnA; thrA; tmk; trpE
Yersinia ruckeri profiles; glnA; gyrB; dnaJ; thrA; hsp60; recA