MLST allelic profiles and sequences

This page contains download links to alleles and profiles that define classic MLST schemes. Where these are hosted on PubMLST, they represent a small subset of the data hosted, all of which is available via the application programming interface (API). A few of the schemes are hosted at Pasteur and the links point to their API.

Download

The information in this table is available in XML format for automated parsing.

Database Download
Achromobacter spp. profiles; nusA; rpoB; eno; gltB; lepA; nuoL; nrdA
Acinetobacter baumannii#1 profiles; Oxf_gltA; Oxf_gyrB; Oxf_gdhB; Oxf_recA; Oxf_cpn60; Oxf_gpi; Oxf_rpoD
Acinetobacter baumannii#2 profiles; Pas_cpn60; Pas_fusA; Pas_gltA; Pas_pyrG; Pas_recA; Pas_rplB; Pas_rpoB
Aeromonas spp. profiles; gyrB; groL; gltA; metG; ppsA; recA
Aggregatibacter actinomycetemcomitans profiles; adk; atpG; frdB; mdh; pgi; recA; zwf
Anaplasma phagocytophilum profiles; pheS; glyA; fumC; mdh; sucA; dnaN; atpA
Arcobacter spp. profiles; aspA; atpA; glnA; gltA; glyA; pgm; tkt
Aspergillus fumigatus profiles; ANX4; BGT1; CAT1; LIP; MAT1_2; SODB; ZRF2
Bacillus cereus profiles; glp; gmk; ilv; pta; pur; pyc; tpi
Bacillus licheniformis profiles; adk; ccpA; recF; rpoB; spo0A; sucC
Bacillus subtilis profiles; glpF; ilvD; pta; purH; pycA; rpoD; tpiA
Bacteroides fragilis profiles; dnaJ; fusA; groL; prfA; recA; rpoB; rprX
Bartonella bacilliformis profiles; ftsZ; flaA; ribC; rnpB; rpoB; bvrR; groEL
Bartonella henselae profiles; 16S; batR; ftsZ; gltA; groEL; nlpD; ribC; rpoB
Bartonella washoensis profiles; 16S; ftsZ; gltA; groEL; ribC; rpoB
Bordetella spp. profiles; adk; fumC; glyA; tyrB; icd; pepA; pgm
Borrelia spp. profiles; clpA; clpX; nifS; pepX; pyrG; recG; rplB; uvrA
Brachyspira hampsonii profiles; Bha_adh; Bha_est; Bha_gdh; Bha_glpK; Bha_pgm; Bha_thi
Brachyspira hyodysenteriae profiles; Bhy_adh; Bhy_alp; Bhy_est; Bhy_gdh; Bhy_glpK; Bhy_pgm; Bhy_thi
Brachyspira intermedia profiles; Bin_adh; Bin_alp; Bin_est; Bin_gdh; Bin_glpK; Bin_pgm; Bin_thi
Brachyspira pilosicoli profiles; Bpi_adh; Bpi_alp; Bpi_est; Bpi_gdh; Bpi_glpK; Bpi_pgm; Bpi_thi
Brachyspira spp. profiles; Bra_adh; Bra_alp; Bra_est; Bra_gdh; Bra_glp; Bra_pgm; Bra_thi
Brucella spp. profiles; gap; aroA; glk; dnaK; gyrB; trpE; cobQ; int_hyp; omp25
Burkholderia cepacia complex profiles; atpD; gltB; gyrB; recA; lepA; phaC; trpB
Burkholderia pseudomallei profiles; ace; gltB; gmhD; lepA; lipA; narK; ndh
Campylobacter concisus/curvus profiles; Cco_aspA; Cco_atpA; Cco_glnA; Cco_gltA; Cco_glyA; Cco_ilvD; Cco_pgm
Campylobacter fetus profiles; Cfe_aspA; Cfe_glnA; Cfe_gltA; Cfe_glyA; Cfe_pgm; Cfe_tkt; Cfe_uncA
Campylobacter helveticus profiles; Che_aspA; Che_atpA; Che_glnA; Che_gltA; Che_glyA; Che_pgm; Che_tkt
Campylobacter hyointestinalis profiles; Chy_aspA; Chy_atpA; Chy_glnA; Chy_gltA; Chy_glyA; Chy_pgm; Chy_tkt
Campylobacter insulaenigrae profiles; Cin_aspA; Cin_atpA; Cin_glnA; Cin_glyA; Cin_pgi; Cin_pgm; Cin_tkt
Campylobacter jejuni profiles; aspA; glnA; gltA; glyA; pgm; tkt; uncA
Campylobacter lanienae profiles; Cln_aspA; Cln_atpA; Cln_glnA; Cln_gltA; Cln_glyA; Cln_pgm; Cln_tkt
Campylobacter lari profiles; Cla_adk; Cla_atpA; Cla_glnA; Cla_glyA; Cla_pgi; Cla_pgm; Cla_tkt
Campylobacter sputorum profiles; Csp_aspA; Csp_atpA; Csp_glnA; Csp_gltA; Csp_glyA; Csp_pgm; Csp_tkt
Campylobacter upsaliensis profiles; Cup_adk; Cup_aspA; Cup_atpA; Cup_glnA; Cup_glyA; Cup_pgi; Cup_tkt
Candida albicans profiles; AAT1a; ACC1; ADP1; MPIb; SYA1; VPS13; ZWF1b
Candida glabrata profiles; FKS; LEU2; NMT1; TRP1; UGP1; URA3
Candida krusei profiles; HIS3; LEU2; NMT1; TRP1; ADE2; LYS2D
Candida tropicalis profiles; ICL1; MDR1; SAPT2; SAPT4; XYR1; ZWF1a
Candidatus Liberibacter solanacearum profiles; adk; atpA; fbpA; ftsZ; glyA; groEL; gyrB
Carnobacterium maltaromaticum profiles; dapE; ddlA; glpQ; ilvE; leuS; pyc; pyrE
Chlamydiales spp. profiles; gatA; oppA; hflX; gidA; enoA; hemN; fumC
Citrobacter freundii profiles; aspC; clpX; fadD; mdh; arcA; dnaG; lysP
Clonorchis sinensis profiles; Actin; Cox1; Cox3; Ef_1a; Its1; Nad4; Nad5; Tubulin
Clostridioides difficile profiles; adk; atpA; dxr; glyA; recA; sodA; tpi
Clostridium botulinum profiles; aroE; mdh; aceK; oppB; rpoB; recA; hsp
Clostridium perfringens profiles; colA; groEL; sodA; plc; gyrB; sigK; pgk; nadA
Clostridium septicum profiles; ddl; dnaK; glpK; groEL; gyrA; recA; tpi
Corynebacterium diphtheriae profiles; atpA; dnaE; dnaK; fusA; leuA; odhA; rpoB
Cronobacter spp. profiles; atpD; fusA; glnS; gltB; gyrB; infB; pps
Cutibacterium acnes profiles; aroE; atpD; gmk; guaA; lepA; sodA; tly; CAMP2
Dichelobacter nodosus profiles; dcd; dtdA; folK; recR; rlmH; rplI; tsaE
Edwardsiella spp. profiles; adk; atpD; dnaJ; gapA; glnA; hsp60; phoR; pyrG; rpoA; tuf
Enterobacter cloacae profiles; dnaA; fusA; gyrB; leuS; pyrG; rplB; rpoB
Enterococcus faecalis profiles; gdh; gyd; pstS; gki; aroE; xpt; yqiL
Enterococcus faecium profiles; atpA; ddl; gdh; purK; gyd; pstS; adk
Escherichia coli#1 profiles; adk; fumC; gyrB; icd; mdh; purA; recA
Escherichia coli#2 profiles; dinB; icdA; pabB; polB; putP; trpA; trpB; uidA
Flavobacterium psychrophilum profiles; atpA; dnaK; fumC; gyrB; murG; trpB; tuf
Gallibacterium anatis profiles; adk; atpD; fumC; gyrB; infB; mdh; recN; thdF
Geotrichum spp. profiles; NUP116; URA1; URA3; SAPT4; PLB3
Glaesserella parasuis profiles; atpD; infB; mdh; rpoB; 6pgd; g3pd; frdB
Haemophilus influenzae profiles; adk; atpG; frdB; fucK; mdh; pgi; recA
Helicobacter cinaedi profiles; 23S_rRNA; ppa; aspA; aroE; atpA; tkt; cdtB
Helicobacter pylori profiles; atpA; efp; mutY; ppa; trpC; ureI; yphC
Helicobacter suis profiles; atpA; efp; mutY; ppa; trpC; ureAB; yphC
Kingella kingae profiles; abcZ; adk; aroE; cpn60; gdh; recA
Klebsiella aerogenes profiles; dnaA; fusA; gyrB; leuS; pryG; rplB; rpoB
Klebsiella oxytoca profiles; gapA; infB; mdh; pgi; phoE; rpoB; tonB
Klebsiella pneumoniae profiles; gapA; infB; mdh; pgi; phoE; rpoB; tonB
Kudoa septempunctata profiles; cox1; rnl
Lactobacillus salivarius profiles; pstB; rpsB; nrdB; rpoA; parB
Lactococcus lactis bacteriophage profiles; terL; mcp; mtp; tmp; lys
Leptospira spp. profiles; glmU_1; pntA_1; sucA_1; tpiA_1; pfkB_1; mreA_1; caiB_1
Leptospira spp.#2 profiles; adk_2; glmU_2; icdA_2; lipL32_2; lipL41_2; mreA_2; pntA_2
Leptospira spp.#3 profiles; adk_3; icdA_3; lipL41_3; rrs2_3; secY_3; lipL32_3
Listeria monocytogenes profiles; abcZ; bglA; cat; dapE; dat; ldh; lhkA
Macrococcus canis profiles; ack; cpn60; fdh; pta; purA; sar; tuf
Macrococcus caseolyticus profiles; ack; cpn60; fdh; pta; purA; sar; tuf
Mammaliicoccus sciuri profiles; ack; aroE; ftsZ; glpK; gmk; pta1; tpiA
Mannheimia haemolytica profiles; adk; aroE; deoD; gapDH; gnd; mdh; zwf
Melissococcus plutonius profiles; argE; galK; gbpB; purR
Moraxella catarrhalis profiles; abcZ; adk; efp; fumC; glyBeta; mutY; ppa; trpE
Mycobacteria spp. profiles; S14Z; L35; S19; L19; S12; S8; L16; S7
Mycobacteroides abscessus profiles; argH; cya; gnd; murC; pta; purH; rpoB
Mycoplasma agalactiae profiles; dnaA; gltX; gyrB; metS; tufA
Mycoplasma anserisalpingitidis profiles; atpG; fusA; pgiB; plsY; uvrA
Mycoplasma bovis profiles; dnaA; gltX; gpsA; gyrB; pta2; tdk; tkt
Mycoplasma flocculare profiles; adk; rpoB; tpiA
Mycoplasma gallisepticum#1 profiles; atpG; dppC; DUF3196; lgT; mraW; plsC; ugpA
Mycoplasma gallisepticum#2 profiles; atpG2; dnaA; fusA; rpoB; ruvB; uvrA
Mycoplasma hominis profiles; uvrA; gyrB; ftsY; tuf; gap
Mycoplasma hyopneumoniae profiles; adk; rpoB; tpiA
Mycoplasma hyorhinis profiles; dnaA; rpoB; gyrB; gltX; adk; gmk
Mycoplasma iowae profiles; dppC; ulaA; valS; rpoC; leuS; kdpA
Mycoplasma pneumoniae profiles; ppa; pgm; gyrB; gmk; glyA; atpA; arcC; adk
Mycoplasma synoviae profiles; adk; atpG; efp; gmk; nagC; ppa; recA
Neisseria spp. profiles; abcZ; adk; aroE; fumC; gdh; pdhC; pgm
Orientia tsutsugamushi profiles; gpsA; mdh; nrdB; nuoF; ppdK; sucB; sucD
Ornithobacterium rhinotracheale profiles; adk; aroE; fumC; gdhA; mdh; pgi; pmi
Paenibacillus larvae profiles; glpF; sigF; glpT; Natrans; rpoB; ftsA; clpC
Pasteurella multocida#1 profiles; RIRDC_adk; RIRDC_est; RIRDC_pmi; RIRDC_zwf; RIRDC_mdh; RIRDC_gdh; RIRDC_pgi
Pasteurella multocida#2 profiles; mh_adk; mh_aroA; mh_deoD; mh_gdhA; mh_g6pd; mh_mdh; mh_pgi
Pediococcus pentosaceus profiles; gyrB; pyc; pgm; leuS; glnA; dalR; pgI
Photobacterium damselae profiles; glpF; gyrB; metG; pntA; pyrC; toxR
Piscirickettsia salmonis profiles; dnaK; efp; fumC; glyA; murG; rpoD; trpB
Porphyromonas gingivalis profiles; ftsQ; gpdxJ; hagB; mcmA; pepO; pga; recA
Pseudomonas aeruginosa profiles; acsA; aroE; guaA; mutL; nuoD; ppsA; trpE
Pseudomonas fluorescens profiles; glnS; gyrB; ileS; nuoD; recA; rpoB; rpoD
Pseudomonas putida profiles; argS; gyrB; ileS; nuoC; ppsA; recA; rpoB; rpoD
Rhodococcus spp. profiles; gapdh; tpi; mdh; icl; rpoB; recA; adk
Riemerella anatipestifer profiles; dnaB; groEL; gyrA; mdh; gluD; gpi; rpoB
Salmonella enterica profiles; aroC; dnaN; hemD; hisD; purE; sucA; thrA
Saprolegnia parasitica profiles; ALTS1; COX1; GLUT; NAD1; RPB2; SHMT; TUBB
Shewanella spp. profiles; 16S_rRNA; adk; atpB; guaA; gyrB; mdh; recA; rpoS
Sinorhizobium spp. profiles; asd; edd; gap; glnD; gnd; nuoE1; ordL2; recA; sucA; zwf
Staphylococcus aureus profiles; arcC; aroE; glpF; gmk; pta; tpi; yqiL
Staphylococcus chromogenes profiles; arcC; hutU; fumC; dnaJ; glpF; menF; pta
Staphylococcus epidermidis profiles; arcC; aroE; gtr; mutS; pyrR; tpiA; yqiL
Staphylococcus haemolyticus profiles; arcC; SH_1200; hemH; leuB; SH1431; cfxE; Ribose_ABC
Staphylococcus hominis profiles; arcC; glpK; gtr; pta; tpiA; tuf
Staphylococcus lugdunensis profiles; aroE; dat; ddl; gmk; ldh; recA; yqiL
Staphylococcus pseudintermedius profiles; ack; cpn60; fdh; pta; purA; sar; tuf
Stenotrophomonas maltophilia profiles; atpD; gapA; guaA; mutM; nuoD; ppsA; recA
Streptococcus agalactiae profiles; adhP; pheS; atr; glnA; sdhA; glcK; tkt
Streptococcus bovis/equinus complex (SBSEC) profiles; ddl; gki; glnA; mutS; mutS2; pheS; proS; pyrE; thrS; tpi
Streptococcus canis profiles; gki; gtr; murI; mutS; recP; xpt; yqiZ
Streptococcus dysgalactiae equisimilis profiles; gki; gtr; murI; mutS; recP; xpt; atoB
Streptococcus gallolyticus profiles; aroE; glgB; nifS; p20; tkt; trpD; uvrA
Streptococcus oralis profiles; aroE; ddl; gdh; gki; hexB; recP; xpt
Streptococcus pneumoniae profiles; aroE; gdh; gki; recP; spi; xpt; ddl
Streptococcus pyogenes profiles; gki; gtr; murI; mutS; recP; xpt; yqiL
Streptococcus suis profiles; aroA; cpn60; dpr; gki; mutS; recA; thrA
Streptococcus thermophilus profiles; ddlA; glcK; proA; ptsI; serB; tkt
Streptococcus thermophilus#2 profiles; carB; clpX; dnaA; murC; murE; pepN; pepX; pyrG; recA; rpoB
Streptococcus uberis profiles; arcC; ddl; gki; recP; tdk; tpi; yqiL
Streptococcus zooepidemicus profiles; arcC; nrdE; proS; spi; tdk; tpi; yqiL
Streptomyces spp profiles; 16S; atpD; gyrB; recA; rpoB; trpB
Taylorella spp. profiles; gltA; gyrB; fh; shmt; tyrB; adk; txn
Tenacibaculum spp. profiles; atpA; dnaK; glyA; gyrB; infB; rlmN; tgt
Treponema pallidum profiles; TP0136; TP0548; TP0705
Trichomonas vaginalis profiles; TRYP; GLUT; FT2A; ALTS; DMRP; SHMT; M6PI
Ureaplasma spp. profiles; ftsH; rpL22; thrS; valS
Vibrio cholerae profiles; adk; gyrB; mdh; metE; pntA; purM; pyrC
Vibrio cholerae#2 profiles; asd; dnaE; lap; pgm; recA
Vibrio parahaemolyticus profiles; dnaE; gyrB; recA; dtdS; pntA; pyrC; tnaA
Vibrio spp. profiles; gyrB; pyrH; recA; atpA
Vibrio tapetis profiles; atpA; fstZ; gapA; hsp60; pyrH; rctB; recA; rpoA; rpoD; topA
Vibrio vulnificus profiles; glp; gyrB; mdh; metG; purM; dtdS; lysA; pntA; pyrC; tnaA
Wolbachia profiles; gatB; coxA; hcpA; ftsZ; fbpA
Xylella fastidiosa profiles; leuA; petC; malF; cysG; holC; nuoL; gltT
Yersinia pseudotuberculosis profiles; adk; argA; aroA; glnA; thrA; tmk; trpE
Yersinia ruckeri profiles; glnA; gyrB; dnaJ; thrA; hsp60; recA