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MLST allelic profiles and sequences

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The information in this table is available in XML format for automated parsing.

Database Data Retrieved
Achromobacter spp. 416 profiles 2018-04-26
nusA; rpoB; eno; gltB; lepA; nuoL; nrdA
Acinetobacter baumannii#1 1801 profiles 2018-04-26
Oxf_gltA; Oxf_gyrB; Oxf_gdhB; Oxf_recA; Oxf_cpn60; Oxf_gpi; Oxf_rpoD
Acinetobacter baumannii#2 1205 profiles 2018-04-26
Pas_cpn60; Pas_fusA; Pas_gltA; Pas_pyrG; Pas_recA; Pas_rplB; Pas_rpoB
Aeromonas spp. 519 profiles 2018-04-26
gyrB; groL; gltA; metG; ppsA; recA
Anaplasma phagocytophilum 118 profiles 2018-04-26
pheS; glyA; fumC; mdh; sucA; dnaN; atpA
Arcobacter spp. 679 profiles 2018-04-26
aspA; atpA; glnA; gltA; glyA; pgm; tkt
Aspergillus fumigatus 48 profiles 2018-04-26
ANX4; BGT1; CAT1; LIP; MAT1_2; SODB; ZRF2
Bacillus cereus 1568 profiles 2018-04-26
glp; gmk; ilv; pta; pur; pyc; tpi
Bacillus licheniformis 27 profiles 2018-04-26
adk; ccpA; recF; rpoB; spo0A; sucC
Bacillus subtilis 155 profiles 2018-04-26
glpF; ilvD; pta; purH; pycA; rpoD; tpiA
Bartonella bacilliformis 14 profiles 2018-04-26
ftsZ; flaA; ribC; rnpB; rpoB; bvrR; groEL
Bartonella henselae 33 profiles 2018-04-26
_16S; batR; ftsZ; gltA; groEL; nlpD; ribC; rpoB
Bordetella spp. 83 profiles 2018-04-26
adk; fumC; glyA; tyrB; icd; pepA; pgm
Borrelia spp. 793 profiles 2018-04-26
clpA; clpX; nifS; pepX; pyrG; recG; rplB; uvrA
Brachyspira hampsonii 20 profiles 2018-04-26
Bha_adh; Bha_est; Bha_gdh; Bha_glpK; Bha_pgm; Bha_thi
Brachyspira hyodysenteriae 241 profiles 2018-04-26
Bhy_adh; Bhy_alp; Bhy_est; Bhy_gdh; Bhy_glpK; Bhy_pgm; Bhy_thi
Brachyspira intermedia 83 profiles 2018-04-26
Bin_adh; Bin_alp; Bin_est; Bin_gdh; Bin_glpK; Bin_pgm; Bin_thi
Brachyspira pilosicoli 124 profiles 2018-04-26
Bpi_adh; Bpi_alp; Bpi_est; Bpi_gdh; Bpi_glpK; Bpi_pgm; Bpi_thi
Brachyspira spp. 36 profiles 2018-04-26
Bra_adh; Bra_alp; Bra_est; Bra_gdh; Bra_glp; Bra_pgm; Bra_thi
Brucella spp. 78 profiles 2018-04-26
gap; aroA; glk; dnaK; gyrB; trpE; cobQ; int_hyp; omp25
Burkholderia cepacia complex 1388 profiles 2018-04-26
atpD; gltB; gyrB; recA; lepA; phaC; trpB
Burkholderia pseudomallei 1657 profiles 2018-04-26
ace; gltB; gmhD; lepA; lipA; narK; ndh
Campylobacter concisus/curvus 130 profiles 2018-04-26
Cco_aspA; Cco_atpA; Cco_glnA; Cco_gltA; Cco_glyA; Cco_ilvD; Cco_pgm
Campylobacter fetus 69 profiles 2018-04-26
Cfe_aspA; Cfe_glnA; Cfe_gltA; Cfe_glyA; Cfe_pgm; Cfe_tkt; Cfe_uncA
Campylobacter helveticus 9 profiles 2018-04-26
Che_aspA; Che_atpA; Che_glnA; Che_gltA; Che_glyA; Che_pgm; Che_tkt
Campylobacter hyointestinalis 132 profiles 2018-04-26
Chy_aspA; Chy_atpA; Chy_glnA; Chy_gltA; Chy_glyA; Chy_pgm; Chy_tkt
Campylobacter insulaenigrae 43 profiles 2018-04-26
Cin_aspA; Cin_atpA; Cin_glnA; Cin_glyA; Cin_pgi; Cin_pgm; Cin_tkt
Campylobacter jejuni 9197 profiles 2018-04-26
aspA; glnA; gltA; glyA; pgm; tkt; uncA
Campylobacter lanienae 171 profiles 2018-04-26
Cln_aspA; Cln_atpA; Cln_glnA; Cln_gltA; Cln_glyA; Cln_pgm; Cln_tkt
Campylobacter lari 155 profiles 2018-04-26
Cla_adk; Cla_atpA; Cla_glnA; Cla_glyA; Cla_pgi; Cla_pgm; Cla_tkt
Campylobacter sputorum 16 profiles 2018-04-26
Csp_aspA; Csp_atpA; Csp_glnA; Csp_gltA; Csp_glyA; Csp_pgm; Csp_tkt
Campylobacter upsaliensis 204 profiles 2018-04-26
Cup_adk; Cup_aspA; Cup_atpA; Cup_glnA; Cup_glyA; Cup_pgi; Cup_tkt
Candida albicans 3490 profiles 2018-04-26
AAT1a; ACC1; ADP1; MPIb; SYA1; VPS13; ZWF1b
Candida glabrata 77 profiles 2018-04-26
FKS; LEU2; NMT1; TRP1; UGP1; URA3
Candida krusei 188 profiles 2018-04-26
HIS3; LEU2; NMT1; TRP1; ADE2; LYS2D
Candida tropicalis 812 profiles 2018-04-26
ICL1; MDR1; SAPT2; SAPT4; XYR1; ZWF1a
Carnobacterium maltaromaticum 56 profiles 2018-04-26
dapE; ddlA; glpQ; ilvE; leuS; pyc; pyrE
Chlamydiales spp. 202 profiles 2018-04-26
gatA; oppA; hflX; gidA; enoA; hemN; fumC
Citrobacter freundii 259 profiles 2018-04-26
aspC; clpX; fadD; mdh; arcA; dnaG; lysP
Clonorchis sinensis 254 profiles 2018-04-26
Actin; Cox1; Cox3; Ef_1a; Its1; Nad4; Nad5; Tubulin
Clostridium botulinum 108 profiles 2018-04-26
aroE; mdh; aceK; oppB; rpoB; recA; hsp
Clostridium difficile 488 profiles 2018-04-26
adk; atpA; dxr; glyA; recA; sodA; tpi
Clostridium septicum 8 profiles 2018-04-26
ddl; dnaK; glpK; groEL; gyrA; recA; tpi
Corynebacterium diphtheriae 538 profiles 2018-04-26
atpA; dnaE; dnaK; fusA; leuA; odhA; rpoB
Cronobacter spp. 644 profiles 2018-04-26
atpD; fusA; glnS; gltB; gyrB; infB; pps
Dichelobacter nodosus 115 profiles 2018-04-26
dcd; dtdA; folK; recR; rlmH; rplI; tsaE
Edwardsiella spp. 18 profiles 2018-04-26
adk; atpD; dnaJ; gapA; glnA; hsp60; phoR; pyrG; rpoA; tuf
Enterobacter cloacae 1035 profiles 2018-04-26
dnaA; fusA; gyrB; leuS; pyrG; rplB; rpoB
Enterococcus faecalis 884 profiles 2018-04-26
gdh; gyd; pstS; gki; aroE; xpt; yqiL
Enterococcus faecium 1462 profiles 2018-04-26
atpA; ddl; gdh; purK; gyd; pstS; adk
Escherichia coli#1 7481 profiles 2018-04-26
adk; fumC; gyrB; icd; mdh; purA; recA
Escherichia coli#2 866 profiles 2018-04-26
dinB; icdA; pabB; polB; putP; trpA; trpB; uidA
Flavobacterium psychrophilum 194 profiles 2018-04-26
atpA; dnaK; fumC; gyrB; murG; trpB; tuf
Gallibacterium anatis 81 profiles 2018-04-26
adk; atpD; fumC; gyrB; infB; mdh; recN; thdF
Haemophilus influenzae 1884 profiles 2018-04-26
adk; atpG; frdB; fucK; mdh; pgi; recA
Haemophilus parasuis 281 profiles 2018-04-26
atpD; infB; mdh; rpoB; _6pgd; g3pd; frdB
Helicobacter cinaedi 19 profiles 2018-04-26
_23S_rRNA; ppa; aspA; aroE; atpA; tkt; cdtB
Helicobacter pylori 3293 profiles 2018-04-26
atpA; efp; mutY; ppa; trpC; ureI; yphC
Helicobacter suis 138 profiles 2018-04-26
atpA; efp; mutY; ppa; trpC; ureAB; yphC
Kingella kingae 70 profiles 2018-04-26
abcZ; adk; aroE; cpn60; gdh; recA
Klebsiella aerogenes 137 profiles 2018-04-26
dnaA; fusA; gyrB; leuS; pryG; rplB; rpoB
Klebsiella oxytoca 198 profiles 2018-04-26
gapA; infB; mdh; pgi; phoE; rpoB; tonB
Klebsiella pneumoniae 3335 profiles 2018-04-26
gapA; infB; mdh; pgi; phoE; rpoB; tonB
Kudoa septempunctata 3 profiles 2018-04-26
cox1; rnl
Lactobacillus salivarius 25 profiles 2018-04-26
pstB; rpsB; nrdB; rpoA; parB
Leptospira spp. 202 profiles 2018-04-25
glmU; pntA; sucA; tpiA; pfkB; mreA; caiB
Leptospira spp.#2 106 profiles 2018-04-26
adk_2; glmU_2; icdA_2; lipL32_2; lipL41_2; mreA_2; pntA_2
Leptospira spp.#3 143 profiles 2018-04-26
adk_3; icdA_3; lipL41_3; rrs2_3; secY_3; lipL32_3
Listeria monocytogenes 1399 profiles 2018-04-26
abcZ; bglA; cat; dapE; dat; ldh; lhkA
Macrococcus canis 32 profiles 2018-04-26
ack; cpn60; fdh; pta; purA; sar; tuf
Macrococcus caseolyticus 30 profiles 2018-04-26
ack; cpn60; fdh; pta; purA; sar; tuf
Mannheimia haemolytica 49 profiles 2018-04-26
adk; aroE; deoD; gapDH; gnd; mdh; zwf
Melissococcus plutonius 35 profiles 2018-04-26
argE; galK; gbpB; purR
Moraxella catarrhalis 373 profiles 2018-04-26
abcZ; adk; efp; fumC; glyBeta; mutY; ppa; trpE
Mycobacterium abscessus 26 profiles 2018-04-26
Mab_argH; Mab_cya; Mab_gnd; Mab_murC; Mab_pta; Mab_purH; Mab_rpoB
Mycobacterium massiliense 12 profiles 2018-04-26
Mma_argH; Mma_cya; Mma_gnd; Mma_murC; Mma_pta; Mma_purH; Mma_rpoB
Mycoplasma agalactiae 34 profiles 2018-04-26
dnaA; gltX; gyrB; metS; tufA
Mycoplasma bovis 134 profiles 2018-04-26
adh1; gltX; gpsA; gyrB; pta2; tdk; tkt
Mycoplasma hyopneumoniae 108 profiles 2018-04-26
adk; rpoB; tpiA
Mycoplasma hyorhinis 75 profiles 2018-04-26
dnaA; rpoB; gyrB; gltX; adk; gmk
Mycoplasma iowae 23 profiles 2018-04-26
dppC; ulaA; valS; rpoC; leuS; kdpA
Mycoplasma pneumoniae 32 profiles 2018-04-26
ppa; pgm; gyrB; gmk; glyA; atpA; arcC; adk
Mycoplasma synoviae 46 profiles 2018-04-26
adk; atpG; efp; gmk; nagC; ppa; recA
Neisseria spp. 13583 profiles 2018-04-26
abcZ; adk; aroE; fumC; gdh; pdhC; pgm
Orientia tsutsugamushi 92 profiles 2018-04-26
gpsA; mdh; nrdF; nuoF; ppdK; sucB; sucD
Ornithobacterium rhinotracheale 35 profiles 2018-04-26
adk; aroE; fumC; gdhA; mdh; pgi; pmi
Paenibacillus larvae 24 profiles 2018-04-26
glpF; sigF; glpT; Natrans; rpoB; ftsA; clpC
Pasteurella multocida#1 348 profiles 2018-04-26
RIRDC_adk; RIRDC_est; RIRDC_pmi; RIRDC_zwf; RIRDC_mdh; RIRDC_gdh; RIRDC_pgi
Pasteurella multocida#2 75 profiles 2018-04-26
mh_adk; mh_aroA; mh_deoD; mh_gdhA; mh_g6pd; mh_mdh; mh_pgi
Pediococcus pentosaceus 17 profiles 2018-04-26
gyrB; pyc; pgm; leuS; glnA; dalR; pgI
Photobacterium damselae 55 profiles 2018-04-26
glpF; gyrB; metG; pntA; pyrC; toxR
Porphyromonas gingivalis 138 profiles 2018-04-26
ftsQ; gpdxJ; hagB; mcmA; pepO; pga; recA
Propionibacterium acnes 138 profiles 2018-04-26
aroE; atpD; gmk; guaA; lepA; sodA; tly; CAMP2
Pseudomonas aeruginosa 3053 profiles 2018-04-26
acs; aro; gua; mut; nuo; pps; trp
Pseudomonas fluorescens 104 profiles 2018-04-26
glnS; gyrB; ileS; nuoD; recA; rpoB; rpoD
Rhodococcus spp. 39 profiles 2018-04-26
gapdh; tpi; mdh; icl; rpoB; recA; adk
Riemerella anatipestifer 44 profiles 2018-04-26
dnaB; groEL; gyrA; mdh; gluD; gpi; rpoB
Salmonella enterica 4111 profiles 2018-04-26
aroC; dnaN; hemD; hisD; purE; sucA; thrA
Sinorhizobium spp. 136 profiles 2018-04-26
asd; edd; gap; glnD; gnd; nuoE1; ordL2; recA; sucA; zwf
Staphylococcus aureus 4704 profiles 2018-04-26
arcC; aroE; glpF; gmk; pta; tpi; yqiL
Staphylococcus epidermidis 700 profiles 2018-04-26
arcC; aroE; gtr; mutS; pyrR; tpiA; yqiL
Staphylococcus haemolyticus 48 profiles 2018-04-26
arcC; SH_1200; hemH; leuB; SH1431; cfxE; Ribose_ABC
Staphylococcus hominis 57 profiles 2018-04-26
arcC; glpK; gtr; pta; tpiA; tuf
Staphylococcus lugdunensis 32 profiles 2018-04-26
aroE; dat; ddl; gmk; ldh; recA; yqiL
Staphylococcus pseudintermedius 1046 profiles 2018-04-26
ack; cpn60; fdh; pta; purA; sar; tuf
Stenotrophomonas maltophilia 295 profiles 2018-04-26
atpD; gapA; guaA; mutM; nuoD; ppsA; recA
Streptococcus agalactiae 1205 profiles 2018-04-26
adhP; pheS; atr; glnA; sdhA; glcK; tkt
Streptococcus bovis/equinus complex (SBSEC) 214 profiles 2018-04-26
ddl; gki; glnA; mutS; mutS2; pheS; proS; pyrE; thrS; tpi
Streptococcus canis 38 profiles 2018-04-26
gki; gtr; murI; mutS; recP; xpt; yqiZ
Streptococcus dysgalactiae equisimilis 398 profiles 2018-04-26
gki; gtr; murI; mutS; recP; xpt; atoB
Streptococcus gallolyticus 109 profiles 2018-04-26
aroE; glgB; nifS; p20; tkt; trpD; uvrA
Streptococcus oralis 78 profiles 2018-04-26
aroE; ddl; gdh; gki; hexB; recP; xpt
Streptococcus pneumoniae 13782 profiles 2018-04-26
aroE; gdh; gki; recP; spi; xpt; ddl
Streptococcus pyogenes 985 profiles 2018-04-26
gki; gtr; murI; mutS; recP; xpt; yqiL
Streptococcus suis 1003 profiles 2018-04-26
aroA; cpn60; dpr; gki; mutS; recA; thrA
Streptococcus thermophilus 125 profiles 2018-04-26
ddlA; glcK; proA; ptsI; serB; tkt
Streptococcus thermophilus#2 119 profiles 2018-04-26
carB; clpX; dnaA; murC; murE; pepN; pepX; pyrG; recA; rpoB
Streptococcus uberis 887 profiles 2018-04-26
arcC; ddl; gki; recP; tdk; tpi; yqiL
Streptococcus zooepidemicus 379 profiles 2018-04-26
arcC; nrdE; proS; spi; tdk; tpi; yqiL
Streptomyces spp 234 profiles 2018-04-26
_16S; atpD; gyrB; recA; rpoB; trpB
Taylorella spp. 57 profiles 2018-04-26
gltA; gyrB; fh; shmt; tyrB; adk; txn
Tenacibaculum spp. 125 profiles 2018-04-26
atpA; dnaK; glyA; gyrB; infB; rlmN; tgt
Trichomonas vaginalis 60 profiles 2018-04-26
TRYP; GLUT; FT2A; ALTS; DMRP; SHMT; M6PI
Vibrio cholerae 610 profiles 2018-04-26
adk; gyrB; mdh; metE; pntA; purM; pyrC
Vibrio parahaemolyticus 1909 profiles 2018-04-26
dnaE; gyrB; recA; dtdS; pntA; pyrC; tnaA
Vibrio spp. 149 profiles 2018-04-26
gyrB; pyrH; recA; atpA
Vibrio tapetis 10 profiles 2018-04-26
atpA; fstZ; gapA; hsp60; pyrH; rctB; recA; rpoA; rpoD; topA
Vibrio vulnificus 364 profiles 2018-04-26
glp; gyrB; mdh; metG; purM; dtdS; lysA; pntA; pyrC; tnaA
Wolbachia 491 profiles 2018-04-26
gatB; coxA; hcpA; ftsZ; fbpA
Xylella fastidiosa 83 profiles 2018-04-26
leuA; petC; malF; cysG; holC; nuoL; gltT
Yersinia pseudotuberculosis 313 profiles 2018-04-26
adk; argA; aroA; glnA; thrA; tmk; trpE
Yersinia ruckeri 30 profiles 2018-04-26
glnA; gyrB; dnaJ; thrA; hsp60; recA
Yersinia spp. 170 profiles 2018-04-26
aarF; dfp; galR; glnS; hemA; rfaE; speA

MLST profiles and sequences

This page is provided as a service to enable the easy importation and linking of publicly-accessible MLST profile and allele data.

Databases hosted on other sites sometimes only make their sequences and profile definitions available as web pages, containing HTML markup code, that makes their automatic importation to offline tools difficult. Here we use a common format so that scripts can easily parse the data for local use. Links to the MLST databases that these lists are generated from are provided. These databases remain the definitive source and all ST and allele assignments are done by their respective curators.

Profiles are available in tab-delimited text format. Sequences are available in FASTA format.