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MLST allelic profiles and sequences

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The information in this table is available in XML format for automated parsing.

Database Data Retrieved
Achromobacter spp. 378 profiles 2017-06-29
nusA; rpoB; eno; gltB; lepA; nuoL; nrdA
Acinetobacter baumannii#1 1581 profiles 2017-06-29
Oxf_gltA; Oxf_gyrB; Oxf_gdhB; Oxf_recA; Oxf_cpn60; Oxf_gpi; Oxf_rpoD
Acinetobacter baumannii#2 1067 profiles 2017-06-29
Pas_cpn60; Pas_fusA; Pas_gltA; Pas_pyrG; Pas_recA; Pas_rplB; Pas_rpoB
Aeromonas spp. 512 profiles 2017-06-29
gyrB; groL; gltA; metG; ppsA; recA
Anaplasma phagocytophilum 118 profiles 2017-06-29
pheS; glyA; fumC; mdh; sucA; dnaN; atpA
Arcobacter spp. 679 profiles 2017-06-29
aspA; atpA; glnA; gltA; glyA; pgm; tkt
Aspergillus fumigatus 48 profiles 2017-06-29
ANX4; BGT1; CAT1; LIP; MAT1_2; SODB; ZRF2
Bacillus cereus 1351 profiles 2017-06-29
glp; gmk; ilv; pta; pur; pyc; tpi
Bacillus licheniformis 27 profiles 2017-06-29
adk; ccpA; recF; rpoB; spo0A; sucC
Bacillus subtilis 155 profiles 2017-06-29
glpF; ilvD; pta; purH; pycA; rpoD; tpiA
Bartonella bacilliformis 14 profiles 2017-06-29
ftsZ; flaA; ribC; rnpB; rpoB; bvrR; groEL
Bartonella henselae 32 profiles 2017-06-29
_16S; batR; ftsZ; gltA; groEL; nlpD; ribC; rpoB
Bordetella spp. 82 profiles 2017-06-29
adk; fumC; glyA; tyrB; icd; pepA; pgm
Borrelia spp. 730 profiles 2017-06-29
clpA; clpX; nifS; pepX; pyrG; recG; rplB; uvrA
Brachyspira hampsonii 20 profiles 2017-06-29
Bha_adh; Bha_est; Bha_gdh; Bha_glpK; Bha_pgm; Bha_thi
Brachyspira hyodysenteriae 219 profiles 2017-06-29
Bhy_adh; Bhy_alp; Bhy_est; Bhy_gdh; Bhy_glpK; Bhy_pgm; Bhy_thi
Brachyspira intermedia 83 profiles 2017-06-29
Bin_adh; Bin_alp; Bin_est; Bin_gdh; Bin_glpK; Bin_pgm; Bin_thi
Brachyspira pilosicoli 124 profiles 2017-06-29
Bpi_adh; Bpi_alp; Bpi_est; Bpi_gdh; Bpi_glpK; Bpi_pgm; Bpi_thi
Brachyspira spp. 36 profiles 2017-06-29
Bra_adh; Bra_alp; Bra_est; Bra_gdh; Bra_glp; Bra_pgm; Bra_thi
Brucella spp. 73 profiles 2017-06-29
gap; aroA; glk; dnaK; gyrB; trpE; cobQ; int_hyp; omp25
Burkholderia cepacia complex 1330 profiles 2017-06-29
atpD; gltB; gyrB; recA; lepA; phaC; trpB
Burkholderia pseudomallei 1558 profiles 2017-06-29
ace; gltB; gmhD; lepA; lipA; narK; ndh
Campylobacter concisus/curvus 130 profiles 2017-06-29
Cco_aspA; Cco_atpA; Cco_glnA; Cco_gltA; Cco_glyA; Cco_ilvD; Cco_pgm
Campylobacter fetus 69 profiles 2017-06-29
Cfe_aspA; Cfe_glnA; Cfe_gltA; Cfe_glyA; Cfe_pgm; Cfe_tkt; Cfe_uncA
Campylobacter helveticus 9 profiles 2017-06-29
Che_aspA; Che_atpA; Che_glnA; Che_gltA; Che_glyA; Che_pgm; Che_tkt
Campylobacter hyointestinalis 131 profiles 2017-06-29
Chy_aspA; Chy_atpA; Chy_glnA; Chy_gltA; Chy_glyA; Chy_pgm; Chy_tkt
Campylobacter insulaenigrae 43 profiles 2017-06-29
Cin_aspA; Cin_atpA; Cin_glnA; Cin_glyA; Cin_pgi; Cin_pgm; Cin_tkt
Campylobacter jejuni 8860 profiles 2017-06-29
aspA; glnA; gltA; glyA; pgm; tkt; uncA
Campylobacter lanienae 171 profiles 2017-06-29
Cln_aspA; Cln_atpA; Cln_glnA; Cln_gltA; Cln_glyA; Cln_pgm; Cln_tkt
Campylobacter lari 65 profiles 2017-06-29
Cla_adk; Cla_atpA; Cla_glnA; Cla_glyA; Cla_pgi; Cla_pgm; Cla_tkt
Campylobacter sputorum 16 profiles 2017-06-29
Csp_aspA; Csp_atpA; Csp_glnA; Csp_gltA; Csp_glyA; Csp_pgm; Csp_tkt
Campylobacter upsaliensis 203 profiles 2017-06-29
Cup_adk; Cup_aspA; Cup_atpA; Cup_glnA; Cup_glyA; Cup_pgi; Cup_tkt
Candida albicans 3370 profiles 2017-06-29
AAT1a; ACC1; ADP1; MPIb; SYA1; VPS13; ZWF1b
Candida glabrata 77 profiles 2017-06-29
FKS; LEU2; NMT1; TRP1; UGP1; URA3
Candida krusei 188 profiles 2017-06-29
HIS3; LEU2; NMT1; TRP1; ADE2; LYS2D
Candida tropicalis 701 profiles 2017-06-29
ICL1; MDR1; SAPT2; SAPT4; XYR1; ZWF1a
Carnobacterium maltaromaticum 39 profiles 2017-06-29
dapE; ddlA; glpQ; ilvE; leuS; pyc; pyrE
Chlamydiales spp. 197 profiles 2017-06-29
gatA; oppA; hflX; gidA; enoA; hemN; fumC
Citrobacter freundii 150 profiles 2017-06-29
aspC; clpX; fadD; mdh; arcA; dnaG; lysP
Clonorchis sinensis 254 profiles 2017-06-29
Actin; Cox1; Cox3; Ef_1a; Its1; Nad4; Nad5; Tubulin
Clostridium botulinum 98 profiles 2017-06-29
aroE; mdh; aceK; oppB; rpoB; recA; hsp
Clostridium difficile 416 profiles 2017-06-29
adk; atpA; dxr; glyA; recA; sodA; tpi
Clostridium septicum 8 profiles 2017-06-29
ddl; dnaK; glpK; groEL; gyrA; recA; tpi
Corynebacterium diphtheriae 481 profiles 2017-06-29
atpA; dnaE; dnaK; fusA; leuA; odhA; rpoB
Cronobacter spp. 600 profiles 2017-06-29
atpD; fusA; glnS; gltB; gyrB; infB; pps
Dichelobacter nodosus 112 profiles 2017-06-29
dcd; dtdA; folK; recR; rlmH; rplI; tsaE
Edwardsiella spp. 18 profiles 2017-06-29
adk; atpD; dnaJ; gapA; glnA; hsp60; phoR; pyrG; rpoA; tuf
Enterobacter cloacae 927 profiles 2017-06-29
dnaA; fusA; gyrB; leuS; pyrG; rplB; rpoB
Enterococcus faecalis 780 profiles 2017-06-29
gdh; gyd; pstS; gki; aroE; xpt; yqiL
Enterococcus faecium 1334 profiles 2017-06-29
atpA; ddl; gdh; purK; gyd; pstS; adk
Escherichia coli#1 7031 profiles 2017-06-29
adk; fumC; gyrB; icd; mdh; purA; recA
Escherichia coli#2 826 profiles 2017-06-29
dinB; icdA; pabB; polB; putP; trpA; trpB; uidA
Flavobacterium psychrophilum 166 profiles 2017-06-29
atpA; dnaK; fumC; gyrB; murG; trpB; tuf
Haemophilus influenzae 1786 profiles 2017-06-29
adk; atpG; frdB; fucK; mdh; pgi; recA
Haemophilus parasuis 266 profiles 2017-06-29
atpD; infB; mdh; rpoB; _6pgd; g3pd; frdB
Helicobacter cinaedi 18 profiles 2017-06-29
_23S_rRNA; ppa; aspA; aroE; atpA; tkt; cdtB
Helicobacter pylori 3143 profiles 2017-06-29
atpA; efp; mutY; ppa; trpC; ureI; yphC
Helicobacter suis 138 profiles 2017-06-29
atpA; efp; mutY; ppa; trpC; ureAB; yphC
Kingella kingae 69 profiles 2017-06-29
abcZ; adk; aroE; cpn60; gdh; recA
Klebsiella oxytoca 186 profiles 2017-06-29
gapA; infB; mdh; pgi; phoE; rpoB; tonB
Klebsiella pneumoniae 2750 profiles 2017-06-29
gapA; infB; mdh; pgi; phoE; rpoB; tonB
Kudoa septempunctata 3 profiles 2017-06-29
cox1; rnl
Lactobacillus salivarius 25 profiles 2017-06-29
pstB; rpsB; nrdB; rpoA; parB
Leptospira spp. 202 profiles 2017-06-28
glmU; pntA; sucA; tpiA; pfkB; mreA; caiB
Leptospira spp.#2 106 profiles 2017-06-29
adk_2; glmU_2; icdA_2; lipL32_2; lipL41_2; mreA_2; pntA_2
Leptospira spp.#3 143 profiles 2017-06-29
adk_3; icdA_3; lipL41_3; rrs2_3; secY_3; lipL32_3
Listeria monocytogenes 1244 profiles 2017-06-29
abcZ; bglA; cat; dapE; dat; ldh; lhkA
Macrococcus canis 22 profiles 2017-06-29
ack; cpn60; fdh; pta; purA; sar; tuf
Macrococcus caseolyticus 12 profiles 2017-06-29
ack; cpn60; fdh; pta; purA; sar; tuf
Mannheimia haemolytica 36 profiles 2017-06-29
adk; aroE; deoD; gapDH; gnd; mdh; zwf
Melissococcus plutonius 34 profiles 2017-06-29
argE; galK; gbpB; purR
Moraxella catarrhalis 351 profiles 2017-06-29
abcZ; adk; efp; fumC; glyBETA; mutY; ppa; trpE
Mycobacterium abscessus 26 profiles 2017-06-29
Mab_argH; Mab_cya; Mab_gnd; Mab_murC; Mab_pta; Mab_purH; Mab_rpoB
Mycobacterium massiliense 12 profiles 2017-06-29
Mma_argH; Mma_cya; Mma_gnd; Mma_murC; Mma_pta; Mma_purH; Mma_rpoB
Mycoplasma agalactiae 32 profiles 2017-06-29
dnaA; gltX; gyrB; metS; tufA
Mycoplasma bovis 41 profiles 2017-06-29
adh1; gltX; gpsA; gyrB; pta2; tdk; tkt
Mycoplasma hyopneumoniae 70 profiles 2017-06-29
adk; rpoB; tpiA
Mycoplasma hyorhinis 70 profiles 2017-06-29
dnaA; rpoB; gyrB; gltX; adk; gmk
Mycoplasma iowae 23 profiles 2017-06-29
dppC; ulaA; valS; rpoC; leuS; kdpA
Mycoplasma pneumoniae 31 profiles 2017-06-29
ppa; pgm; gyrB; gmk; glyA; atpA; arcC; adk
Mycoplasma synoviae 46 profiles 2017-06-29
adk; atpG; efp; gmk; nagC; ppa; recA
Neisseria spp. 13033 profiles 2017-06-29
abcZ; adk; aroE; fumC; gdh; pdhC; pgm
Orientia tsutsugamushi 92 profiles 2017-06-29
gpsA; mdh; nrdF; nuoF; ppdK; sucB; sucD
Ornithobacterium rhinotracheale 31 profiles 2017-06-29
adk; aroE; fumC; gdhA; mdh; pgi; pmi
Paenibacillus larvae 23 profiles 2017-06-29
glpF; sigF; glpT; Natrans; rpoB; ftsA; clpC
Pasteurella multocida#1 339 profiles 2017-06-29
RIRDC_adk; RIRDC_est; RIRDC_pmi; RIRDC_zwf; RIRDC_mdh; RIRDC_gdh; RIRDC_pgi
Pasteurella multocida#2 71 profiles 2017-06-29
mh_adk; mh_aroA; mh_deoD; mh_gdhA; mh_g6pd; mh_mdh; mh_pgi
Pediococcus pentosaceus 17 profiles 2017-06-29
gyrB; pyc; pgm; leuS; glnA; dalR; pgI
Photobacterium damselae 55 profiles 2017-06-29
glpF; gyrB; metG; pntA; pyrC; toxR
Porphyromonas gingivalis 138 profiles 2017-06-29
ftsQ; gpdxJ; hagB; mcmA; pepO; pga; recA
Propionibacterium acnes 123 profiles 2017-06-29
aroE; atpD; gmk; guaA; lepA; sodA; tly; CAMP2
Pseudomonas aeruginosa 2556 profiles 2017-06-29
acs; aro; gua; mut; nuo; pps; trp
Pseudomonas fluorescens 102 profiles 2017-06-29
glnS; gyrB; ileS; nuoD; recA; rpoB; rpoD
Riemerella anatipestifer 36 profiles 2017-06-29
dnaB; groEL; gyrA; mdh; gluD; gpi; rpoB
Salmonella enterica 3706 profiles 2017-06-29
aroC; dnaN; hemD; hisD; purE; sucA; thrA
Sinorhizobium spp. 136 profiles 2017-06-29
asd; edd; gap; glnD; gnd; nuoE1; ordL2; recA; sucA; zwf
Staphylococcus aureus 4158 profiles 2017-06-29
arcC; aroE; glpF; gmk; pta; tpi; yqiL
Staphylococcus epidermidis 626 profiles 2017-06-29
arcC; aroE; gtr; mutS; pyrR; tpiA; yqiL
Staphylococcus haemolyticus 43 profiles 2017-06-29
arcC; SH_1200; hemH; leuB; SH1431; cfxE; Ribose_ABC
Staphylococcus lugdunensis 31 profiles 2017-06-29
aroE; dat; ddl; gmk; ldh; recA; yqiL
Staphylococcus pseudintermedius 740 profiles 2017-06-29
ack; cpn60; fdh; pta; purA; sar; tuf
Stapylococcus hominis 40 profiles 2017-06-29
arcC; glpK; gtr; pta; tpiA; tuf
Stenotrophomonas maltophilia 229 profiles 2017-06-29
atpD; gapA; guaA; mutM; nuoD; ppsA; recA
Streptococcus agalactiae 1146 profiles 2017-06-29
adhP; pheS; atr; glnA; sdhA; glcK; tkt
Streptococcus bovis/equinus complex (SBSEC) 213 profiles 2017-06-29
ddl; gki; glnA; mutS; mutS2; pheS; proS; pyrE; thrS; tpi
Streptococcus canis 38 profiles 2017-06-29
gki; gtr; murI; mutS; recP; xpt; yqiZ
Streptococcus dysgalactiae equisimilis 317 profiles 2017-06-29
gki; gtr; murI; mutS; recP; xpt; atoB
Streptococcus gallolyticus 109 profiles 2017-06-29
aroE; glgB; nifS; p20; tkt; trpD; uvrA
Streptococcus oralis 78 profiles 2017-06-29
aroE; ddl; gdh; gki; hexB; recP; xpt
Streptococcus pneumoniae 13354 profiles 2017-06-29
aroE; gdh; gki; recP; spi; xpt; ddl
Streptococcus pyogenes 954 profiles 2017-06-29
gki; gtr; murI; mutS; recP; xpt; yqiL
Streptococcus suis 840 profiles 2017-06-29
aroA; cpn60; dpr; gki; mutS; recA; thrA
Streptococcus thermophilus 125 profiles 2017-06-29
ddlA; glcK; proA; ptsI; serB; tkt
Streptococcus thermophilus#2 119 profiles 2017-06-29
carB; clpX; dnaA; murC; murE; pepN; pepX; pyrG; recA; rpoB
Streptococcus uberis 874 profiles 2017-06-29
arcC; ddl; gki; recP; tdk; tpi; yqiL
Streptococcus zooepidemicus 374 profiles 2017-06-29
arcC; nrdE; proS; spi; tdk; tpi; yqiL
Streptomyces spp 234 profiles 2017-06-29
_16S; atpD; gyrB; recA; rpoB; trpB
Taylorella spp. 54 profiles 2017-06-29
gltA; gyrB; fh; shmt; tyrB; adk; txn
Tenacibaculum spp. 125 profiles 2017-06-29
atpA; dnaK; glyA; gyrB; infB; rlmN; tgt
Trichomonas vaginalis 60 profiles 2017-06-29
TRYP; GLUT; FT2A; ALTS; DMRP; SHMT; M6PI
Vibrio cholerae 513 profiles 2017-06-29
adk; gyrB; mdh; metE; pntA; purM; pyrC
Vibrio parahaemolyticus 1737 profiles 2017-06-29
dnaE; gyrB; recA; dtdS; pntA; pyrC; tnaA
Vibrio spp. 149 profiles 2017-06-29
gyrB; pyrH; recA; atpA
Vibrio tapetis 10 profiles 2017-06-29
atpA; fstZ; gapA; hsp60; pyrH; rctB; recA; rpoA; rpoD; topA
Vibrio vulnificus 349 profiles 2017-06-29
glp; gyrB; mdh; metG; purM; dtdS; lysA; pntA; pyrC; tnaA
Wolbachia 471 profiles 2017-06-29
gatB; coxA; hcpA; ftsZ; fbpA
Xylella fastidiosa 79 profiles 2017-06-29
leuA; petC; malF; cysG; holC; nuoL; gltT
Yersinia pseudotuberculosis 273 profiles 2017-06-29
adk; argA; aroA; glnA; thrA; tmk; trpE
Yersinia ruckeri 30 profiles 2017-06-29
glnA; gyrB; dnaJ; thrA; hsp60; recA
Yersinia spp. 170 profiles 2017-06-29
aarF; dfp; galR; glnS; hemA; rfaE; speA

MLST profiles and sequences

This page is provided as a service to enable the easy importation and linking of publicly-accessible MLST profile and allele data.

Databases hosted on other sites sometimes only make their sequences and profile definitions available as web pages, containing HTML markup code, that makes their automatic importation to offline tools difficult. Here we use a common format so that scripts can easily parse the data for local use. Links to the MLST databases that these lists are generated from are provided. These databases remain the definitive source and all ST and allele assignments are done by their respective curators.

Profiles are available in tab-delimited text format. Sequences are available in FASTA format.