Skip to main content

User account menu

  • My Account
PubMLST
Public databases for molecular typing
and microbial genome diversity

Main navigation

  • Home
  • Organisms
  • Species ID
  • About us
  • Updates

  1. Home

  2. Organisms

Bacteroides fragilis

Source of isolates submitted to the Bacteroides fragilis database
Submit

This MLST scheme was developed by Ulrik Stenz Justesen and Flemming Damgaard Nielsen at the Odense University Hospital, Denmark. It is described in Nielsen et al. 2023 Microbiol Spectr 11(2): e0511122.

Database curated by Ulrik.Stenz.Justesenatrsyd.dk (Ulrik Stenz Justesen) and flemmingdnatmsn.com (Flemming Damgaard Nielsen).

  • Primers
The preferred citation for this website is:

Jolley et al. Wellcome Open Res 2018, 3:124 [version 1; referees: 2 approved].

Typing

The typing database contains nomenclature - allele definitions that provide an identifier for every unique allele sequence, and MLST profiles that index each unique combination of alleles with a sequence type (ST).

Allele sequences:
331
Last updated:
2025-05-21

Isolate collection

The isolate database consists of isolate records containing provenance and phenotype information linked to molecular typing information. These records may also include genome assemblies.

Isolates:
676
Last updated:
2025-03-24

Genome collection

A subset of records within the isolate database may contain genomes assemblies. You can access these from the isolate database by filtering on sequence bin size in a query.

Genomes:
1
Last updated:
2025-03-24

Contact

Get in touch with us if you have any comments or suggestions concerning the website and the databases.

Cite us

Please cite Jolley et al. 2018 Wellcome Open Res 3:124 if you use data or analysis from PubMLST in your publications.

Follow

  • https://bsky.app/profile/pubmlst.org
  • https://www.youtube.com/@pubmlst

Supported by

Wellcome Trust

Footer menu

  • Disclaimer & Privacy
  • Cookies
  • Terms & Conditions

Website by Manta Ray Media