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PubMLST
Public databases for molecular typing
and microbial genome diversity

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Bacteroides fragilis

Source of isolates submitted to the Bacteroides fragilis database
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This MLST scheme was developed by Ulrik Stenz Justesen and Flemming Damgaard Nielsen at the Odense University Hospital, Denmark. It is described in Nielsen et al. 2023 Microbiol Spectr 11(2): e0511122.

Database curated by Ulrik.Stenz.Justesenatrsyd.dk (Ulrik Stenz Justesen) and flemmingdnatmsn.com (Flemming Damgaard Nielsen).

  • Primers
The preferred citation for this website is:

Jolley et al. Wellcome Open Res 2018, 3:124 [version 1; referees: 2 approved].

Typing

The typing database contains nomenclature - allele definitions that provide an identifier for every unique allele sequence, and MLST profiles that index each unique combination of alleles with a sequence type (ST).

Allele sequences:
308
Last updated:
2025-02-28

Isolate collection

The isolate database consists of isolate records containing provenance and phenotype information linked to molecular typing information. These records may also include genome assemblies.

Isolates:
676
Last updated:
2025-03-24

Genome collection

A subset of records within the isolate database may contain genomes assemblies. You can access these from the isolate database by filtering on sequence bin size in a query.

Genomes:
1
Last updated:
2025-03-24

Contact

Get in touch with us if you have any comments or suggestions concerning the website and the databases.

Cite us

Please cite Jolley et al. 2018 Wellcome Open Res 3:124 if you use data or analysis from PubMLST in your publications.

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Wellcome Trust

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