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A collection of open-access, curated databases that integrate population sequence data with provenance and phenotype information for over 100 different microbial species and genera.

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Choose your organism from a list of over 100 species and genera-specific databases. Access molecular typing and isolate records.

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Use ribosomal MLST to accurately identify bacterial species from a genome assembly.

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We welcome submissions to the databases we host. Submissions may consist of new allele sequences, MLST profiles, or isolate records. Isolates may be accompanied by a genome assembly.

@pubmlst

RT @sylvainbrisse Involved in #diphtheria pathogen sequencing? Please note that the MLST strain nomenclature platform for diphtheriae/ulcerans has moved to BIGSdb-Pasteur https://t.co/SohTII38Yd Big thanks to @MaidenLab @keithajolley for earlier maintenance and Sebastien Bridel for data migration https://t.co/BWi1ssToU3

#diphtheria

07 Jan 2022

A MLST scheme for Bacteroides fragilis is now available on PubMLST. This has been developed by Ulrik Stenz Justesen and Flemming Damgaard Nielsen at the Odense University Hospital, Denmark. https://t.co/eJv2laMWci

23 Nov 2021

RT @MaidenLab Go to https://t.co/q64NIonHQq to see how dashboards enhance accessiblity to and linkage of all sequence, genomic, provenance, and phenotype data for your favorite bug (we have >100 open-access databases, but if your fave bug is not featured, why not contact us to set one up?). https://t.co/8VHyix5hHC

15 Nov 2021

RT @keithajolley BIGSdb v1.32.0 has been released. This adds new optional front-end dashboards to isolate databases hosted on @PubMLST. https://t.co/QAM6tgyuWc

15 Nov 2021

@MarDir6 Thank you for volunteering. PubMLST relies on our international community of curators - we couldn't do it without you!

09 Nov 2021

A cgMLST scheme for the livestock pathogen Clostridium chauvoei is now available at https://t.co/UVTwTdc01C. The scheme is described in Thomas et el. 2021 Front Microbiol - https://t.co/F0FUSz2FWi.

08 Oct 2021

Videos from the PubMLST forum event celebrating 10 years of the @M_R_F Meningococcal Genome Library are now available on the PubMLST YouTube channel. https://t.co/vnUELcHv69

22 Sep 2021

To mark this anniversary, join us on 17 September 2021. Two morning sessions will highlight the establishment and public health application of the meningococcal genome library and afternoon sessions will highlight the contributions from external users, including industry.

17 Aug 2021

Shortly after its inception, the MRF-MGL contributed to the introduction of the ACYW meningococcal vaccines into the UK and it remains an essential resource, nationally and internationally.

17 Aug 2021

Over this time, sequence-based molecular typing has become an essential component of invasive meningococcal disease surveillance world-wide and standardised typing methods and schemes have allowed comparability across reference and research laboratories in different countries.

17 Aug 2021

Embedded within the https://t.co/leydcwWim4 platform MRF-MGL stores provenance, demographic, epidemiological, and whole genome sequence information for more than 5,000 meningococci isolated from patients in the UK over the past 10 years.

17 Aug 2021

The next PubMLST forum event will be a hybrid meeting to celebrate 10 years of the @M_R_F Meningococcal Genome Library. It will be on 17 September from 10am UK (GMT+1) via Zoom and in person. Register at https://t.co/XJkxJBGoJ9.

17 Aug 2021

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