MLST databases and software

Welcome to PubMLST - Public databases for molecular typing and microbial genome diversity.

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Databases
Download MLST definitions - allelic profiles and sequences from all publicly accessible databases
BIGSdb - software that runs most of the databases on this site
Documentation - user and curator guides for BIGSdb
Information about all species MLST databases and published schemes
Recent publications that use or mention MLST
News and updates
Policy document
RESTful Application Programming Interface (API)

Please contact us if you would like us to host a MLST database for a particular organism, or have a request for new functionality.

This site is hosted at The Department of Zoology, University of Oxford, UK and is funded by The Wellcome Trust.

News

2019-02-11: A MLST scheme for "Candidatus Liberibacter solanacearum" has been developed by Minna Haapalainen and colleagues at the University of Helsinki, Finland, and is now available.

2018-11-15: A MLST scheme for Pseudomonas putida has been developed by Kohei Ogura at Kanazawa University, Japan, and is now available.

2018-10-30: A MLST scheme for Treponema pallidum subsp. pallidum has been developed by Linda Grillová and colleagues at the Masaryk University, Brno, Czech Republic and University of Zurich, Zurich, Switzerland, and is now available.

2018-10-26: A MLST scheme for Piscirickettsia salmonis has been developed by Adolfo Isla and colleagues at Universidad Austral de Chile, and is now available.

Latest updates