Home

A collection of open-access, curated databases that integrate population sequence data with provenance and phenotype information for over 100 different microbial species and genera.

23,644,831

847,283

601,745

Organisms search

Search

Organisms

Choose your organism from a list of over 100 species and genera-specific databases. Access molecular typing and isolate records.

Species ID

Use ribosomal MLST to accurately identify bacterial species from a genome assembly.

Submit data

We welcome submissions to the databases we host. Submissions may consist of new allele sequences, MLST profiles, or isolate records. Isolates may be accompanied by a genome assembly.

@pubmlst

Topics discussed will be:
* The role of curators
* The process of handling submissions
* How curation can be improved with automation

19 Jan 2021

We are organising a forum to bring together existing curators and anybody who has a potential interest in joining the team - all are welcome. This will be held online via Zoom on Feb 5, 2-3.30pm GMT (UK). Please register for the event at: https://t.co/XsSRrSR2vF.

19 Jan 2021

Experimental annotation quality metrics are now in use on the PubMLST Neisseria database (https://t.co/5XAhrkWdBv). https://t.co/xDnDzkXYtc

15 Jan 2021

RT @sophie_octavia Vibrio cholerae surveillance in freshwater rivers in Zhejiang China, work by @amandaunsw, @mjohnpayne, @RuitingLan. #lanlab collaborative effort with Zhejiang CDC and Hangzhou Medical College #pubmlst #cholera #microbialsurveillance #AMR https://t.co/5v9tLIOpO5

11 Jan 2021

A MLST scheme for the goose pathogen Mycoplasma anserisalpingitidis is now available at https://t.co/Cs6RhjxW0x. This has been developed by Áron Kovács and colleagues at the Institute for Veterinary Medical Research, Hungary and is described in https://t.co/leenPwuZrc.

11 Jan 2021

RT @keithajolley BIGSdb v1.29.4 released. This version now enables uploading sequence queries or genome submission files in compressed formats (gzip/zip), with improved drag & drop support. https://t.co/rQWQAmnqqZ

17 Dec 2020

@karinlag Not explicitly, but you could query the API to find schemes matching any term, e.g. using the script at https://t.co/Zxu3ErPHiz. If you then go to the appropriate database you can find more scheme info by following links from 'Information' ... 'Database status'.

26 Nov 2020

The species id tool, incorporated in PubMLST databases is now much quicker. https://t.co/Ox29W8EMXM

26 Nov 2020

RT @MaidenLab @PubMLST @OdileHarrison PubMLST used in our collaboration to establish a rapid peer-to-peer infectious disease surveillance network of reference labs in the pandemic. Pre-print available: https://t.co/yfrNBAdpPM see the effects of COVID containment measures on respiratory bacterial pathogens globally

26 Nov 2020

Angela Brueggemann's presentation describing IRIS at the PubMLST showcase has now been uploaded for viewing. https://t.co/aOOHSscvRq

23 Nov 2020

The IRIS project nicely demonstrates how the PubMLST database infrastructure can be used to facilitate both public and private data collection and organisation for a large international consortium.

https://t.co/mAxVLFzDql

23 Nov 2020

Videos from the PubMLST showcase event on Friday are now available online at https://t.co/tbhfT3CWQf.

16 Nov 2020

Home

Organisms search

Search

@pubmlst

Contact

Supported by

Home

Organisms search

Search

@pubmlst

Contact

Follow

Supported by