PubMLST - Public databases for molecular typing and microbial genome diversity

A collection of open-access, curated databases that integrate population sequence data with provenance and phenotype information for over 140 different microbial species and genera.

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Organisms

Choose your organism from a list of over 130 species and genera-specific databases. Access molecular typing and isolate records.

Species ID

Use ribosomal MLST to accurately identify bacterial species from a genome assembly.

Submit data

We welcome submissions to the databases we host. Submissions may consist of allele sequences, MLST profiles, or isolate records with or without genome assemblies.

Global Meningitis Genome Library

Global genome data on the four leading causes of bacterial meningitis: the meningococcus, the pneumococcus, Haemophilus influenzae, and Group B streptococci (GBS).

Sexually transmitted infections

Databases for major causative agents of STIs: Neisseria gonorrhoeae, Chlamydiales spp, Mycoplasma genitalium, and Treponema pallidum

Pasteur BIGSdb

Our close colleagues and friends at the Institut Pasteur, Paris, host databases for a range of species not available on PubMLST. The same software is used for both sites.

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