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Neisseria Sequence Typing Home Page

This site uses two linked databases powered by the BIGSdb genomics platform. The sequence definition database contains allele sequence and MLST profile definitions whereas the isolate database contains provenance and epidemiological information. Further details about BIGSdb can be found in Jolley & Maiden 2010, BMC Bioinformatics 11:595.

As well as MLST, the platform contains sequence data for other genetic targets, allowing MLST, PorA, porB, FetA, fHbp, penA, rpoB and other sequences to be queried from the same interface.

Citing the database

The preferred format for citing this website in publications is:

This publication made use of the Neisseria Multi Locus Sequence Typing website (https://pubmlst.org/ neisseria/) developed by Keith Jolley and sited at the University of Oxford (Jolley et al. Wellcome Open Res 2018, 3:124 [version 1; referees: 2 approved]). The development of this site has been funded by the Wellcome Trust and European Union.

The preferred format for citing the MRF Meningococcus Genome Library is here.

Status

Sequence database
Sequences: 1,218,732
Profiles:
MLST: 14,019
rplF species: 165
beta lactamase plasmid: 18
Bexsero Antigen Sequence Typing (BAST): 3,041
Conjugative Plasmid: 242
Cryptic Plasmid: 96
N. gonorrhoeae cgMLST v1.0: 4,887
NG STAR: 831
N. meningitidis cgMLST v1.0: 14,574

Isolate database
Isolates: 47,948
Last updated: 2018-12-17