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Campylobacter MLST Home Page

This site uses two linked databases powered by the BIGSdb genomics platform. The sequence definition database contains allele sequence and MLST profile definitions whereas the isolate database contains provenance and epidemiological information. Further details about BIGSdb can be found in Jolley & Maiden 2010, BMC Bioinformatics 11:595.

Database submissions - We are using an automated system for submitting MLST data to all the Campylobacter database curators.

The jejuni/coli database is curated by Alison Cody and Frances Colles. The non-jejuni/coli database is curated by William Miller.

Initial development funded by the Wellcome Trust. Fla database initially funded by DEFRA grant 0Z0615.

Please note that the non-jejuni/coli databases will no longer be curated after January 31 2019. If you are interested in taking on the role of curator, please contact Keith Jolley. See a brief overview of the role of a curator for more details.

Citing the database

The preferred format for citing this website in publications is:

This publication made use of the Campylobacter Multi Locus Sequence Typing website (https://pubmlst.org/ campylobacter/) sited at the University of Oxford (Jolley et al. Wellcome Open Res 2018, 3:124 [version 1; referees: 2 approved]). The development of this site has been funded by the Wellcome Trust.

Status

jejuni/coli

Sequence database
Sequences: 912,138
Profiles:
MLST: 9,464
C. jejuni / C. coli cgMLST v1.0: 20,753

Isolate database
Isolates: 71,708
Last updated: 2018-12-12