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Campylobacter MLST Home Page

This site uses two linked databases powered by the BIGSdb genomics platform. The sequence definition database contains allele sequence and MLST profile definitions whereas the isolate database contains provenance and epidemiological information. Further details about BIGSdb can be found in Jolley & Maiden 2010, BMC Bioinformatics 11:595.

Database submissions - We are using an automated system for submitting MLST data to all the Campylobacter database curators.

The jejuni/coli database is curated by Alison Cody and Frances Colles. The non-jejuni/coli database is curated by William Miller.

Initial development funded by the Wellcome Trust. Fla database initially funded by DEFRA grant 0Z0615.

Citing the database

The preferred format for citing this website in publications is:

This publication made use of the Campylobacter Multi Locus Sequence Typing website (https://pubmlst.org/ campylobacter/) sited at the University of Oxford (Jolley & Maiden 2010, BMC Bioinformatics, 11:595). The development of this site has been funded by the Wellcome Trust.



Sequence database
Sequences: 894,337
MLST: 9,376
C. jejuni / C. coli cgMLST v1.0: 19,855

Isolate database
Isolates: 70,617
Last updated: 2018-09-21