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PubMLST
Public databases for molecular typing
and microbial genome diversity

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  3. Rhodococcus spp.

Rhodococcus spp.

Source of isolates submitted to the Rhodococcus spp. database
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This MLST scheme was developed by Fabien.DUQUESNEatanses.fr (Fabien Duquesne) and colleagues at the Dozulé Laboratory for Equine Diseases, ANSES, France. It is described in Duquesne et al. 2017 Vet Microbiol 210:64-70.

Database curated by Fabien.DUQUESNEatanses.fr (Fabien Duquesne).

  • Primers
The preferred citation for this website is:

Jolley et al. Wellcome Open Res 2018, 3:124 [version 1; referees: 2 approved].

Typing

The typing database contains nomenclature - allele definitions that provide an identifier for every unique allele sequence, and MLST profiles that index each unique combination of alleles with a sequence type (ST).

Allele sequences:
130
Last updated:
2024-06-10

Isolate collection

The isolate database consists of isolate records containing provenance and phenotype information linked to molecular typing information. These records may also include genome assemblies.

Isolates:
187
Last updated:
2024-06-15

Genome collection

A subset of records within the isolate database may contain genomes assemblies. You can access these from the isolate database by filtering on sequence bin size in a query.

Genomes:
38
Last updated:
2024-06-14

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Get in touch with us if you have any comments or suggestions concerning the website and the databases.

Cite us

Please cite Jolley et al. 2018 Wellcome Open Res 3:124 if you use data or analysis from PubMLST in your publications.

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Wellcome Trust

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