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Lactobacillus salivarius MLST Databases

This site uses two linked databases powered by the BIGSdb genomics platform. The sequence definition database contains allele sequence and MLST profile definitions whereas the isolate database contains provenance and epidemiological information. Further details about BIGSdb can be found in Jolley & Maiden 2010, BMC Bioinformatics 11:595.

This MLST scheme was developed by Emma Raftis (University College, Cork, Ireland) and colleagues. It is described in Raftis et al. 2011 Appl Environ Microbiol 77:954-65.

This scheme is no longer being curated as there is nobody willing to oversee it. If you are interested in taking on the role of curator, please contact Keith Jolley. See a brief overview of the role of a curator for more details.

Citing the database

The preferred format for citing this website in publications is:

This publication made use of the Lactobacillus salivarius Multi Locus Sequence Typing website (https://pubmlst.org/ lsalivarius/) sited at the University of Oxford (Jolley et al. Wellcome Open Res 2018, 3:124 [version 1; referees: 2 approved]). The development of this site has been funded by the Wellcome Trust.


Sequence database
Sequences: 69
Profiles (MLST): 25
Last updated: 2010-12-07

Isolate database
Isolates: 33
Last updated: 2010-12-07