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PubMLST
Public databases for molecular typing
and microbial genome diversity

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Vibrio cholerae

Source of isolates submitted to the Vibrio cholerae database
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The non O1/O139 MLST scheme is described in Octavia et al. 2013 PLoS One 8:e65342. This is curated by sophie.octaviaatgmail.com (Sophie Octavia).

  • Primers

The O1/O139 MLST scheme is described in Kanampalliwar & Singh 2020 Front Microbiol 11:1838 and is curated by amol.kanampalliwaratgmail.com (Amol Kanampalliwar).

  • Primers

The cgMLST scheme is described in Liang et al. 2020 J Bacteriol 202:e00086-20.This is curated by kliangatualberta.ca (Kevin Liang).

The preferred citation for this website is:

Jolley et al. Wellcome Open Res 2018, 3:124 [version 1; referees: 2 approved].

Typing

The typing database contains nomenclature - allele definitions that provide an identifier for every unique allele sequence, and MLST profiles that index each unique combination of alleles with a sequence type (ST).

Allele sequences:
597,660
Last updated:
2025-05-07

Isolate collection

The isolate database consists of isolate records containing provenance and phenotype information linked to molecular typing information. These records may also include genome assemblies.

Isolates:
4,065
Last updated:
2025-05-02

Genome collection

A subset of records within the isolate database may contain genomes assemblies. You can access these from the isolate database by filtering on sequence bin size in a query.

Genomes:
1,989
Last updated:
2024-12-12

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Get in touch with us if you have any comments or suggestions concerning the website and the databases.

Cite us

Please cite Jolley et al. 2018 Wellcome Open Res 3:124 if you use data or analysis from PubMLST in your publications.

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Wellcome Trust

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