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Vibrio cholerae MLST Databases

This site uses two linked databases powered by the BIGSdb genomics platform. The sequence definition database contains allele sequence and MLST profile definitions whereas the isolate database contains provenance and epidemiological information. Further details about BIGSdb can be found in Jolley & Maiden 2010, BMC Bioinformatics 11:595.

Citing the database

The preferred format for citing this website in publications is:

This publication made use of the Vibrio cholerae MLST website (https://pubmlst.org/ vcholerae/) sited at the University of Oxford (Jolley & Maiden 2010, BMC Bioinformatics, 11:595). The development of this site has been funded by the Wellcome Trust.

Status

Sequence database
Sequences: 1,566
Profiles:
MLST: 617
MLST (O1 and O139): 594

Isolate database
Isolates: 1,264
Last updated: 2018-06-08