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Enterococcus faecalis MLST Databases

This site uses two linked databases powered by the BIGSdb genomics platform. The sequence definition database contains allele sequence and MLST profile definitions whereas the isolate database contains provenance and epidemiological information. Further details about BIGSdb can be found in Jolley & Maiden 2010, BMC Bioinformatics 11:595.

We are looking for new curators for this database. If you use this database regularly and would like to assist in the curation effort, please contact Keith Jolley. Please see the brief overview of the role of a curator for more details of the role.

This MLST scheme is described in Ruiz-Garbajosa et al. 2006 J Clin Microbiol 44:2220-8.

Database temporarily curated by Keith Jolley. Thanks to Janetta Top for all her curation efforts over the years.

Citing the database

The preferred format for citing this website in publications is:

This publication made use of the Enterococcus faecalis MLST website (https://pubmlst.org/ efaecalis/) sited at the University of Oxford (Jolley et al. Wellcome Open Res 2018, 3:124 [version 1; referees: 2 approved]). The development of this site has been funded by the Wellcome Trust.

Status

Sequence database
Sequences: 652
Profiles (MLST): 973
Last updated: 2019-12-04

Isolate database
Isolates: 1,923
Last updated: 2019-12-04