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MLST allelic profiles and sequences

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The information in this table is available in XML format for automated parsing.

Database Data Retrieved
Achromobacter spp. 230 profiles 2014-08-30
nusA; rpoB; eno; gltB; lepA; nuoL; nrdA
Acinetobacter baumannii#1 797 profiles 2014-08-30
gltA; gyrB; gdhB; recA; cpn60; gpi; rpoD
Acinetobacter baumannii#2 601 profiles 2014-08-30
cpn60; fusA; gltA; pyrG; recA; rplB; rpoB
Aeromonas spp. 304 profiles 2014-08-30
gyrB; groL; gltA; metG; ppsA; recA
Anaplasma phagocytophilum 112 profiles 2014-08-30
pheS; glyA; fumC; mdh; sucA; dnaN; atpA
Arcobacter spp. 439 profiles 2014-08-30
aspA; atpA; glnA; gltA; glyA; pgm; tkt
Aspergillus fumigatus 43 profiles 2014-08-30
ANX4; BGT1; CAT1; LIP; MAT1_2; SODB; ZRF2
Bacillus cereus 988 profiles 2014-08-30
glp; gmk; ilv; pta; pur; pyc; tpi
Bacillus licheniformis 27 profiles 2014-08-30
adk; ccpA; recF; rpoB; spo0A; sucC
Bacillus subtilis 46 profiles 2014-08-30
glpF; ilvD; pta; purH; pycA; rpoD; tpiA
Bifidobacterium 102 profiles 2014-08-30
clpC; fusA; gyrB; ileS; purF; rplB; rpoB
Bordetella spp. 81 profiles 2014-08-30
adk; fumC; glyA; tyrB; icd; pepA; pgm
Borrelia burgdorferi 569 profiles 2014-08-30
clpA; clpX; nifS; pepX; pyrG; recG; rplB; uvrA
Brachyspira hampsonii 11 profiles 2014-08-30
Bha_adh; Bha_est; Bha_gdh; Bha_glpK; Bha_pgm; Bha_thi
Brachyspira hyodysenteriae 111 profiles 2014-08-30
Bhy_adh; Bhy_alp; Bhy_est; Bhy_gdh; Bhy_glpK; Bhy_pgm; Bhy_thi
Brachyspira intermedia 75 profiles 2014-08-30
Bin_adh; Bin_alp; Bin_est; Bin_gdh; Bin_glpK; Bin_pgm; Bin_thi
Brachyspira pilosicoli 124 profiles 2014-08-30
Bpi_adh; Bpi_alp; Bpi_est; Bpi_gdh; Bpi_glpK; Bpi_pgm; Bpi_thi
Brachyspira spp. 36 profiles 2014-08-30
Bra_adh; Bra_alp; Bra_est; Bra_gdh; Bra_glp; Bra_pgm; Bra_thi
Burkholderia cepacia complex 881 profiles 2014-08-30
atpD; gltB; gyrB; recA; lepA; phaC; trpB
Burkholderia pseudomallei 1299 profiles 2014-08-30
ace; gltB; gmhD; lepA; lipA; narK; ndh
Campylobacter concisus/curvus 124 profiles 2014-08-30
Cco_aspA; Cco_atpA; Cco_glnA; Cco_gltA; Cco_glyA; Cco_ilvD; Cco_pgm
Campylobacter fetus 48 profiles 2014-08-30
aspA; glnA; gltA; glyA; pgm; tkt; uncA
Campylobacter helveticus 8 profiles 2014-08-30
Che_aspA; Che_atpA; Che_glnA; Che_gltA; Che_glyA; Che_pgm; Che_tkt
Campylobacter hyointestinalis 109 profiles 2014-08-30
Chy_aspA; Chy_atpA; Chy_glnA; Chy_gltA; Chy_glyA; Chy_pgm; Chy_tkt
Campylobacter insulaenigrae 43 profiles 2014-08-30
Cin_aspA; Cin_atpA; Cin_glnA; Cin_glyA; Cin_pgi; Cin_pgm; Cin_tkt
Campylobacter jejuni 7326 profiles 2014-08-30
aspA; glnA; gltA; glyA; pgm; tkt; uncA
Campylobacter lanienae 69 profiles 2014-08-30
Cln_aspA; Cln_atpA; Cln_glnA; Cln_gltA; Cln_glyA; Cln_pgm; Cln_tkt
Campylobacter lari 18 profiles 2014-08-30
Cla_adk; Cla_atpA; Cla_glnA; Cla_glyA; Cla_pgi; Cla_pgm; Cla_tkt
Campylobacter sputorum 16 profiles 2014-08-30
Csp_aspA; Csp_atpA; Csp_glnA; Csp_gltA; Csp_glyA; Csp_pgm; Csp_tkt
Campylobacter upsaliensis 155 profiles 2014-08-30
Cup_adk; Cup_aspA; Cup_atpA; Cup_glnA; Cup_glyA; Cup_pgi; Cup_tkt
Candida albicans 2407 profiles 2014-08-30
AAT1a; ACC1; ADP1; MPIb; SYA1; VPS13; ZWF1b
Candida glabrata 68 profiles 2014-08-30
FKS; LEU2; NMT1; TRP1; UGP1; URA3
Candida krusei 186 profiles 2014-08-30
HIS3; LEU2; NMT1; TRP1; ADE2; LYS2D
Candida tropicalis 389 profiles 2014-08-30
ICL1; MDR1; SAPT2; SAPT4; XYR1; ZWF1a
Carnobacterium maltaromaticum 36 profiles 2014-08-30
dapE; ddlA; glpQ; ilvE; leuS; pyc; pyrE
Chlamydiales spp. 90 profiles 2014-08-30
gatA; oppA; hflX; gidA; enoA; hemN; fumC
Citrobacter freundii 8 profiles 2014-08-30
aspC; clpX; fadD; mdh; arcA; dnaG; lysP
Clonorchis sinensis 254 profiles 2014-08-30
Actin; Cox1; Cox3; Ef_1a; Its1; Nad4; Nad5; Tubulin
Clostridium botulinum 83 profiles 2014-08-30
aroE; mdh; aceK; oppB; rpoB; recA; hsp
Clostridium difficile 277 profiles 2014-08-30
adk; atpA; dxr; glyA; recA; sodA; tpi
Clostridium difficile#2 70 profiles 2014-08-30
aroE; dutA; gmk; groEL; recA; sodA; tpi
Clostridium septicum 8 profiles 2014-08-30
ddl; dnaK; glpK; groEL; gyrA; recA; tpi
Corynebacterium diphtheriae 325 profiles 2014-08-30
atpA; dnaE; dnaK; fusA; leuA; odhA; rpoB
Cronobacter spp. 296 profiles 2014-08-30
atpD; fusA; glnS; gltB; gyrB; infB; pps
Cryptococcus neoformans 53 profiles 2014-08-30
CAP59; GPD1; IGS1; LAC1; PLB1; SOD1; URA5
Enterobacter cloacae 254 profiles 2014-08-30
dnaA; fusA; gyrB; leuS; pyrG; rplB; rpoB
Enterococcus faecalis 583 profiles 2014-08-30
gdh; gyd; pstS; gki; aroE; xpt; yqil
Enterococcus faecium 917 profiles 2014-08-30
AtpA; Ddl; Gdh; PurK; Gyd; PstS; Adk
Escherichia coli#1 4176 profiles 2014-08-30
adk; fumC; gyrB; icd; mdh; purA; recA
Escherichia coli#2 624 profiles 2014-08-30
dinB; icdA; pabB; polB; putP; trpA; trpB; uidA
Flavobacterium psychrophilum 166 profiles 2014-08-30
atpA; dnaK; fumC; gyrB; murG; trpB; tuf
Haemophilus influenzae 1364 profiles 2014-08-30
adk; atpG; frdB; fucK; mdh; pgi; recA
Haemophilus parasuis 148 profiles 2014-08-30
atpD; infB; mdh; rpoB; _6pgd; g3pd; frdB
Helicobacter cinaedi 18 profiles 2014-08-30
_23S_rRNA; ppa; aspA; aroE; atpA; tkt; cdtB
Helicobacter pylori 2883 profiles 2014-08-30
atpA; efp; mutY; ppa; trpC; ureI; yphC
Helicobacter suis 25 profiles 2014-08-30
atpA; efp; mutY; ppa; trpC; ureAB; yphC
Klebsiella oxytoca 131 profiles 2014-08-30
gapA; infB; mdh; pgi; phoE; rpoB; tonB
Klebsiella pneumoniae 1641 profiles 2014-08-30
gapA; infB; mdh; pgi; phoE; rpoB; tonB
Lactobacillus casei 40 profiles 2014-08-30
fusA; ileS; lepA; leuS; pyrG; recA; recG
Lactobacillus salivarius 25 profiles 2014-08-30
pstB; rpsB; nrdB; rpoA; parB
Leptospira spp. 201 profiles 2014-08-30
glmU; pntA; sucA; tpiA; pfkB; mreA; caiB
Leptospira spp.#2 96 profiles 2014-08-30
adk; glmU; icdA; lipL32; lipL41; mreA; pntA
Listeria monocytogenes 691 profiles 2014-08-30
abcZ; bglA; cat; dapE; dat; ldh; lhkA
Mannheimia haemolytica 36 profiles 2014-08-30
adk; aroE; deoD; gapDH; gnd; mdh; zwf
Melissococcus plutonius 27 profiles 2014-08-30
argE; galK; gbpB; purR
Moraxella catarrhalis 228 profiles 2014-08-30
abcZ; adk; efp; fumC; glyBETA; mutY; ppa; trpE
Mycobacterium abscessus 26 profiles 2014-08-30
argH; cya; gnd; murC; pta; purH; rpoB
Mycobacterium massiliense 12 profiles 2014-08-30
argH; cya; gnd; murC; pta; purH; rpoB
Mycoplasma agalactiae 18 profiles 2014-08-30
dnaA; gltX; gyrB; metS; tufA
Mycoplasma hyorhinis 29 profiles 2014-08-30
dnaA; rpoB; gyrB; gltX; adk; gmk
Neisseria spp. 10935 profiles 2014-08-30
abcZ; adk; aroE; fumC; gdh; pdhC; pgm
Pantoea agglomerans 22 profiles 2014-08-30
fusA; gyrB; leuS; pyrG; rplB; rpoB
Pasteurella multocida#1 285 profiles 2014-08-30
adk; est; pmi; zwf; mdh; gdh; pgi
Pasteurella multocida#2 61 profiles 2014-08-30
adk; aroA; deoD; gdhA; g6pd; mdh; pgi
Pediococcus pentosaceus 17 profiles 2014-08-30
gyrB; pyc; pgm; leuS; glnA; dalR; pgI
Plesiomonas shigelloides 76 profiles 2014-08-30
fusA; leuS; pyrG; recG; rpoB
Porphyromonas gingivalis 138 profiles 2014-08-30
ftsQ; gpdxJ; hagB; mcmA; pepO; pga; recA
Propionibacterium acnes 121 profiles 2014-08-30
aroE; atpD; gmk; guaA; lepA; sodA; tly; CAMP2
Propionibacterium freudenreichii 46 profiles 2014-08-30
adk; fumC; gtf; pf1637; pf169; recA; rpoB
Pseudomonas aeruginosa 1920 profiles 2014-08-30
acs; aro; gua; mut; nuo; pps; trp
Pseudomonas fluorescens 98 profiles 2014-08-30
glnS; gyrB; ileS; nuoD; recA; rpoB; rpoD
Salmonella enterica 1748 profiles 2014-08-30
aroC; dnaN; hemD; hisD; purE; sucA; thrA
Sinorhizobium spp. 136 profiles 2014-08-30
asd; edd; gap; glnD; gnd; nuoE1; ordL2; recA; sucA; zwf
Staphylococcus aureus 2789 profiles 2014-08-30
arcc; aroe; glpf; gmk_; pta_; tpi_; yqil
Staphylococcus epidermidis 556 profiles 2014-08-30
arcC; aroE; gtr; mutS; pyr; tpi; yqiL
Staphylococcus pseudintermedius 388 profiles 2014-08-30
ack; cpn60; fdh; pta; purA; sar; tuf
Stenotrophomonas maltophilia 96 profiles 2014-08-30
atpD; gapA; guaA; mutM; nuoD; ppsA; recA
Streptococcus agalactiae 710 profiles 2014-08-30
adhP; pheS; atr; glnA; sdhA; glcK; tkt
Streptococcus canis 25 profiles 2014-08-30
gki; gtr; murI; mutS; recP; xpt; yqiZ
Streptococcus dysgalactiae equisimilis 189 profiles 2014-08-30
gki; gtr; murI; mutS; recP; xpt; atoB
Streptococcus gallolyticus 90 profiles 2014-08-30
aroE; glgB; nifS; p20; tkt; trpD; uvrA
Streptococcus oralis 77 profiles 2014-08-30
aroE; ddl; gdh; gki; hexB; recP; xpt
Streptococcus pneumoniae 9747 profiles 2014-08-30
aroE; gdh; gki; recP; spi; xpt; ddl
Streptococcus pyogenes 628 profiles 2014-08-30
gki_; gtr_; muri; muts; recp; xpt_; yqil
Streptococcus suis 515 profiles 2014-08-30
aroA; cpn60; dpr; gki; mutS; recA; thrA
Streptococcus thermophilus 116 profiles 2014-08-30
ddlA; glcK; proA; ptsI; serB; tkt
Streptococcus uberis 639 profiles 2014-08-30
arcC; ddl; gki; recP; tdk; tpi; yqiL
Streptococcus zooepidemicus 318 profiles 2014-08-30
arcC; nrdE; proS; spi; tdk; tpi; yqiL
Streptomyces spp 135 profiles 2014-08-30
_16S; atpD; gyrB; recA; rpoB; trpB
Taylorella spp. 50 profiles 2014-08-30
gltA; gyrB; fh; shmt; tyrB; adk; txn
Vibrio cholerae 177 profiles 2014-08-30
adk; gyrB; mdh; metE; pntA; purM; pyrC
Vibrio parahaemolyticus 1116 profiles 2014-08-30
dnaE; gyrB; recA; dtdS; pntA; pyrC; tnaA
Vibrio spp. 149 profiles 2014-08-30
gyrB; pyrH; recA; atpA
Vibrio tapetis 10 profiles 2014-08-30
atpA; fstZ; gapA; hsp60; pyrH; rctB; recA; rpoA; rpoD; topA
Vibrio vulnificus 216 profiles 2014-08-30
glp; gyrB; mdh; metG; purM; dtdS; lysA; pntA; pyrC; tnaA
Wolbachia 422 profiles 2014-08-30
gatB; coxA; hcpA; ftsZ; fbpA
Xylella fastidiosa 58 profiles 2014-08-30
leuA; petC; malF; cysG; holC; nuoL; gltT
Yersinia pseudotuberculosis 123 profiles 2014-08-30
adk; argA; aroA; glnA; thrA; tmk; trpE
Yersinia ruckeri 30 profiles 2014-08-30
glnA; gyrB; dnaJ; thrA; hsp60; recA
Yersinia spp. 169 profiles 2014-08-30
aarF; dfp; galR; glnS; hemA; rfaE; speA

MLST profiles and sequences

This page is provided as a service to enable the easy importation and linking of publicly-accessible MLST profile and allele data.

Databases hosted on other sites sometimes only make their sequences and profile definitions available as web pages, containing HTML markup code, that makes their automatic importation to offline tools difficult. Here we use a common format so that scripts can easily parse the data for local use. Links to the MLST databases that these lists are generated from are provided. These databases remain the definitive source and all ST and allele assignments are done by their respective curators.

Profiles are available in tab-delimited text format. Sequences are available in FASTA format.