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MLST allelic profiles and sequences

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The information in this table is available in XML format for automated parsing.

Database Data Retrieved
Achromobacter spp. 248 profiles 2014-12-20
nusA; rpoB; eno; gltB; lepA; nuoL; nrdA
Acinetobacter baumannii#1 840 profiles 2014-12-20
Oxf_gltA; Oxf_gyrB; Oxf_gdhB; Oxf_recA; Oxf_cpn60; Oxf_gpi; Oxf_rpoD
Acinetobacter baumannii#2 637 profiles 2014-12-20
Pas_cpn60; Pas_fusA; Pas_gltA; Pas_pyrG; Pas_recA; Pas_rplB; Pas_rpoB
Aeromonas spp. 331 profiles 2014-12-20
gyrB; groL; gltA; metG; ppsA; recA
Anaplasma phagocytophilum 112 profiles 2014-12-20
pheS; glyA; fumC; mdh; sucA; dnaN; atpA
Arcobacter spp. 439 profiles 2014-12-20
aspA; atpA; glnA; gltA; glyA; pgm; tkt
Aspergillus fumigatus 48 profiles 2014-12-20
ANX4; BGT1; CAT1; LIP; MAT1_2; SODB; ZRF2
Bacillus cereus 989 profiles 2014-12-20
glp; gmk; ilv; pta; pur; pyc; tpi
Bacillus licheniformis 27 profiles 2014-12-20
adk; ccpA; recF; rpoB; spo0A; sucC
Bacillus subtilis 114 profiles 2014-12-20
glpF; ilvD; pta; purH; pycA; rpoD; tpiA
Bifidobacterium 102 profiles 2014-12-20
clpC; fusA; gyrB; ileS; purF; rplB; rpoB
Bordetella spp. 81 profiles 2014-12-20
adk; fumC; glyA; tyrB; icd; pepA; pgm
Borrelia burgdorferi 615 profiles 2014-12-20
clpA; clpX; nifS; pepX; pyrG; recG; rplB; uvrA
Brachyspira hampsonii 11 profiles 2014-12-20
Bha_adh; Bha_est; Bha_gdh; Bha_glpK; Bha_pgm; Bha_thi
Brachyspira hyodysenteriae 124 profiles 2014-12-20
Bhy_adh; Bhy_alp; Bhy_est; Bhy_gdh; Bhy_glpK; Bhy_pgm; Bhy_thi
Brachyspira intermedia 75 profiles 2014-12-20
Bin_adh; Bin_alp; Bin_est; Bin_gdh; Bin_glpK; Bin_pgm; Bin_thi
Brachyspira pilosicoli 124 profiles 2014-12-20
Bpi_adh; Bpi_alp; Bpi_est; Bpi_gdh; Bpi_glpK; Bpi_pgm; Bpi_thi
Brachyspira spp. 36 profiles 2014-12-20
Bra_adh; Bra_alp; Bra_est; Bra_gdh; Bra_glp; Bra_pgm; Bra_thi
Burkholderia cepacia complex 894 profiles 2014-12-20
atpD; gltB; gyrB; recA; lepA; phaC; trpB
Burkholderia pseudomallei 1329 profiles 2014-12-20
ace; gltB; gmhD; lepA; lipA; narK; ndh
Campylobacter concisus/curvus 124 profiles 2014-12-20
Cco_aspA; Cco_atpA; Cco_glnA; Cco_gltA; Cco_glyA; Cco_ilvD; Cco_pgm
Campylobacter fetus 48 profiles 2014-12-20
Cfe_aspA; Cfe_glnA; Cfe_gltA; Cfe_glyA; Cfe_pgm; C_fe_tkt; Cfe_uncA
Campylobacter helveticus 8 profiles 2014-12-20
Che_aspA; Che_atpA; Che_glnA; Che_gltA; Che_glyA; Che_pgm; Che_tkt
Campylobacter hyointestinalis 109 profiles 2014-12-20
Chy_aspA; Chy_atpA; Chy_glnA; Chy_gltA; Chy_glyA; Chy_pgm; Chy_tkt
Campylobacter insulaenigrae 43 profiles 2014-12-20
Cin_aspA; Cin_atpA; Cin_glnA; Cin_glyA; Cin_pgi; Cin_pgm; Cin_tkt
Campylobacter jejuni 7475 profiles 2014-12-20
aspA; glnA; gltA; glyA; pgm; tkt; uncA
Campylobacter lanienae 69 profiles 2014-12-20
Cln_aspA; Cln_atpA; Cln_glnA; Cln_gltA; Cln_glyA; Cln_pgm; Cln_tkt
Campylobacter lari 18 profiles 2014-12-20
Cla_adk; Cla_atpA; Cla_glnA; Cla_glyA; Cla_pgi; Cla_pgm; Cla_tkt
Campylobacter sputorum 16 profiles 2014-12-20
Csp_aspA; Csp_atpA; Csp_glnA; Csp_gltA; Csp_glyA; Csp_pgm; Csp_tkt
Campylobacter upsaliensis 175 profiles 2014-12-20
Cup_adk; Cup_aspA; Cup_atpA; Cup_glnA; Cup_glyA; Cup_pgi; Cup_tkt
Candida albicans 2593 profiles 2014-12-20
AAT1a; ACC1; ADP1; MPIb; SYA1; VPS13; ZWF1b
Candida glabrata 68 profiles 2014-12-20
FKS; LEU2; NMT1; TRP1; UGP1; URA3
Candida krusei 186 profiles 2014-12-20
HIS3; LEU2; NMT1; TRP1; ADE2; LYS2D
Candida tropicalis 407 profiles 2014-12-20
ICL1; MDR1; SAPT2; SAPT4; XYR1; ZWF1a
Carnobacterium maltaromaticum 39 profiles 2014-12-20
dapE; ddlA; glpQ; ilvE; leuS; pyc; pyrE
Chlamydiales spp. 91 profiles 2014-12-20
gatA; oppA; hflX; gidA; enoA; hemN; fumC
Citrobacter freundii 19 profiles 2014-12-20
aspC; clpX; fadD; mdh; arcA; dnaG; lysP
Clonorchis sinensis 254 profiles 2014-12-20
Actin; Cox1; Cox3; Ef_1a; Its1; Nad4; Nad5; Tubulin
Clostridium botulinum 83 profiles 2014-12-20
aroE; mdh; aceK; oppB; rpoB; recA; hsp
Clostridium difficile 284 profiles 2014-12-20
adk; atpA; dxr; glyA; recA; sodA; tpi
Clostridium difficile#2 70 profiles 2014-12-20
aroE; dutA; gmk; groEL; recA; sodA; tpi
Clostridium septicum 8 profiles 2014-12-20
ddl; dnaK; glpK; groEL; gyrA; recA; tpi
Corynebacterium diphtheriae 349 profiles 2014-12-20
atpA; dnaE; dnaK; fusA; leuA; odhA; rpoB
Cronobacter spp. 336 profiles 2014-12-20
atpD; fusA; glnS; gltB; gyrB; infB; pps
Cryptococcus neoformans 53 profiles 2014-12-20
CAP59; GPD1; IGS1; LAC1; PLB1; SOD1; URA5
Enterobacter cloacae 374 profiles 2014-12-20
dnaA; fusA; gyrB; leuS; pyrG; rplB; rpoB
Enterococcus faecalis 617 profiles 2014-12-20
gdh; gyd; pstS; gki; aroE; xpt; yqiL
Enterococcus faecium 965 profiles 2014-12-20
atpA; ddl; gdh; purK; gyd; pstS; adk
Escherichia coli#1 4330 profiles 2014-12-20
adk; fumC; gyrB; icd; mdh; purA; recA
Escherichia coli#2 653 profiles 2014-12-20
dinB; icdA; pabB; polB; putP; trpA; trpB; uidA
Flavobacterium psychrophilum 166 profiles 2014-12-20
atpA; dnaK; fumC; gyrB; murG; trpB; tuf
Haemophilus influenzae 1413 profiles 2014-12-20
adk; atpG; frdB; fucK; mdh; pgi; recA
Haemophilus parasuis 157 profiles 2014-12-20
atpD; infB; mdh; rpoB; _6pgd; g3pd; frdB
Helicobacter cinaedi 18 profiles 2014-12-20
_23S_rRNA; ppa; aspA; aroE; atpA; tkt; cdtB
Helicobacter pylori 2905 profiles 2014-12-20
atpA; efp; mutY; ppa; trpC; ureI; yphC
Helicobacter suis 25 profiles 2014-12-20
atpA; efp; mutY; ppa; trpC; ureAB; yphC
Klebsiella oxytoca 131 profiles 2014-12-20
gapA; infB; mdh; pgi; phoE; rpoB; tonB
Klebsiella pneumoniae 1677 profiles 2014-12-20
gapA; infB; mdh; pgi; phoE; rpoB; tonB
Lactobacillus casei 40 profiles 2014-12-20
fusA; ileS; lepA; leuS; pyrG; recA; recG
Lactobacillus salivarius 25 profiles 2014-12-20
pstB; rpsB; nrdB; rpoA; parB
Leptospira spp. 202 profiles 2014-12-20
glmU; pntA; sucA; tpiA; pfkB; mreA; caiB
Leptospira spp.#2 96 profiles 2014-12-20
adk_2; glmU_2; icdA_2; lipL32_2; lipL41_2; mreA_2; pntA_2
Leptospira spp.#3 136 profiles 2014-12-20
adk_3; icdA_3; lipL41_3; rrs2_3; secY_3; lipL32_3
Listeria monocytogenes 713 profiles 2014-12-20
abcZ; bglA; cat; dapE; dat; ldh; lhkA
Mannheimia haemolytica 36 profiles 2014-12-20
adk; aroE; deoD; gapDH; gnd; mdh; zwf
Melissococcus plutonius 27 profiles 2014-12-20
argE; galK; gbpB; purR
Moraxella catarrhalis 259 profiles 2014-12-20
abcZ; adk; efp; fumC; glyBETA; mutY; ppa; trpE
Mycobacterium abscessus 26 profiles 2014-12-20
argH; cya; gnd; murC; pta; purH; rpoB
Mycobacterium massiliense 12 profiles 2014-12-20
argH; cya; gnd; murC; pta; purH; rpoB
Mycoplasma agalactiae 18 profiles 2014-12-20
dnaA; gltX; gyrB; metS; tufA
Mycoplasma bovis 32 profiles 2014-12-20
adh1; gltX; gpsA; gyrB; pta2; tdk; tkt
Mycoplasma hyorhinis 29 profiles 2014-12-20
dnaA; rpoB; gyrB; gltX; adk; gmk
Neisseria spp. 11081 profiles 2014-12-20
abcZ; adk; aroE; fumC; gdh; pdhC; pgm
Paenibacillus larvae 21 profiles 2014-12-20
glpF; sigF; glpT; Natrans; rpoB; ftsA; clpC
Pantoea agglomerans 22 profiles 2014-12-20
fusA; gyrB; leuS; pyrG; rplB; rpoB
Pasteurella multocida#1 285 profiles 2014-12-20
adk; est; pmi; zwf; mdh; gdh; pgi
Pasteurella multocida#2 62 profiles 2014-12-20
adk; aroA; deoD; gdhA; g6pd; mdh; pgi
Pediococcus pentosaceus 17 profiles 2014-12-20
gyrB; pyc; pgm; leuS; glnA; dalR; pgI
Plesiomonas shigelloides 76 profiles 2014-12-20
fusA; leuS; pyrG; recG; rpoB
Porphyromonas gingivalis 138 profiles 2014-12-20
ftsQ; gpdxJ; hagB; mcmA; pepO; pga; recA
Propionibacterium acnes 121 profiles 2014-12-20
aroE; atpD; gmk; guaA; lepA; sodA; tly; CAMP2
Propionibacterium freudenreichii 46 profiles 2014-12-20
adk; fumC; gtf; pf1637; pf169; recA; rpoB
Pseudomonas aeruginosa 1931 profiles 2014-12-20
acs; aro; gua; mut; nuo; pps; trp
Pseudomonas fluorescens 98 profiles 2014-12-20
glnS; gyrB; ileS; nuoD; recA; rpoB; rpoD
Salmonella enterica 1764 profiles 2014-12-20
aroC; dnaN; hemD; hisD; purE; sucA; thrA
Sinorhizobium spp. 136 profiles 2014-12-20
asd; edd; gap; glnD; gnd; nuoE1; ordL2; recA; sucA; zwf
Staphylococcus aureus 2849 profiles 2014-12-20
arcc; aroe; glpf; gmk_; pta_; tpi_; yqil
Staphylococcus epidermidis 568 profiles 2014-12-20
arcC; aroE; gtr; mutS; pyr; tpi; yqiL
Staphylococcus pseudintermedius 400 profiles 2014-12-20
ack; cpn60; fdh; pta; purA; sar; tuf
Stenotrophomonas maltophilia 113 profiles 2014-12-20
atpD; gapA; guaA; mutM; nuoD; ppsA; recA
Streptococcus agalactiae 734 profiles 2014-12-20
adhP; pheS; atr; glnA; sdhA; glcK; tkt
Streptococcus canis 25 profiles 2014-12-20
gki; gtr; murI; mutS; recP; xpt; yqiZ
Streptococcus dysgalactiae equisimilis 189 profiles 2014-12-20
gki; gtr; murI; mutS; recP; xpt; atoB
Streptococcus gallolyticus 90 profiles 2014-12-20
aroE; glgB; nifS; p20; tkt; trpD; uvrA
Streptococcus oralis 77 profiles 2014-12-20
aroE; ddl; gdh; gki; hexB; recP; xpt
Streptococcus pneumoniae 10060 profiles 2014-12-20
aroE; gdh; gki; recP; spi; xpt; ddl
Streptococcus pyogenes 647 profiles 2014-12-20
gki_; gtr_; muri; muts; recp; xpt_; yqil
Streptococcus suis 618 profiles 2014-12-20
aroA; cpn60; dpr; gki; mutS; recA; thrA
Streptococcus thermophilus 116 profiles 2014-12-20
ddlA; glcK; proA; ptsI; serB; tkt
Streptococcus uberis 639 profiles 2014-12-20
arcC; ddl; gki; recP; tdk; tpi; yqiL
Streptococcus zooepidemicus 324 profiles 2014-12-20
arcC; nrdE; proS; spi; tdk; tpi; yqiL
Streptomyces spp 135 profiles 2014-12-20
_16S; atpD; gyrB; recA; rpoB; trpB
Taylorella spp. 49 profiles 2014-12-20
gltA; gyrB; fh; shmt; tyrB; adk; txn
Vibrio cholerae 193 profiles 2014-12-20
adk; gyrB; mdh; metE; pntA; purM; pyrC
Vibrio parahaemolyticus 1130 profiles 2014-12-20
dnaE; gyrB; recA; dtdS; pntA; pyrC; tnaA
Vibrio spp. 149 profiles 2014-12-20
gyrB; pyrH; recA; atpA
Vibrio tapetis 10 profiles 2014-12-20
atpA; fstZ; gapA; hsp60; pyrH; rctB; recA; rpoA; rpoD; topA
Vibrio vulnificus 287 profiles 2014-12-20
glp; gyrB; mdh; metG; purM; dtdS; lysA; pntA; pyrC; tnaA
Wolbachia 430 profiles 2014-12-20
gatB; coxA; hcpA; ftsZ; fbpA
Xylella fastidiosa 58 profiles 2014-12-20
leuA; petC; malF; cysG; holC; nuoL; gltT
Yersinia pseudotuberculosis 123 profiles 2014-12-20
adk; argA; aroA; glnA; thrA; tmk; trpE
Yersinia ruckeri 30 profiles 2014-12-20
glnA; gyrB; dnaJ; thrA; hsp60; recA
Yersinia spp. 169 profiles 2014-12-20
aarF; dfp; galR; glnS; hemA; rfaE; speA

MLST profiles and sequences

This page is provided as a service to enable the easy importation and linking of publicly-accessible MLST profile and allele data.

Databases hosted on other sites sometimes only make their sequences and profile definitions available as web pages, containing HTML markup code, that makes their automatic importation to offline tools difficult. Here we use a common format so that scripts can easily parse the data for local use. Links to the MLST databases that these lists are generated from are provided. These databases remain the definitive source and all ST and allele assignments are done by their respective curators.

Profiles are available in tab-delimited text format. Sequences are available in FASTA format.