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MLST allelic profiles and sequences

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The information in this table is available in XML format for automated parsing.

Database Data Retrieved
Achromobacter spp. 207 profiles 2014-04-17
nusA; rpoB; eno; gltB; lepA; nuoL; nrdA
Acinetobacter baumannii#1 770 profiles 2014-04-17
gltA; gyrB; gdhB; recA; cpn60; gpi; rpoD
Acinetobacter baumannii#2 485 profiles 2014-04-17
cpn60; fusA; gltA; pyrG; recA; rplB; rpoB
Aeromonas spp. 252 profiles 2014-04-17
gyrB; groL; gltA; metG; ppsA; recA
Anaplasma phagocytophilum 92 profiles 2014-04-17
pheS; glyA; fumC; mdh; sucA; dnaN; atpA
Arcobacter spp. 439 profiles 2014-04-17
aspA; atpA; glnA; gltA; glyA; pgm; tkt
Aspergillus fumigatus 43 profiles 2014-04-17
ANX4; BGT1; CAT1; LIP; MAT1_2; SODB; ZRF2
Bacillus cereus 829 profiles 2014-04-17
glp; gmk; ilv; pta; pur; pyc; tpi
Bacillus licheniformis 27 profiles 2014-04-17
adk; ccpA; recF; rpoB; spo0A; sucC
Bifidobacterium 102 profiles 2014-04-17
clpC; fusA; gyrB; ileS; purF; rplB; rpoB
Bordetella spp. 81 profiles 2014-04-17
adk; fumC; glyA; tyrB; icd; pepA; pgm
Borrelia burgdorferi 535 profiles 2014-04-17
clpA; clpX; nifS; pepX; pyrG; recG; rplB; uvrA
Brachyspira hampsonii 0 profiles 2014-04-17
Bha_adh; Bha_est; Bha_gdh; Bha_glpK; Bha_pgm; Bha_thi
Brachyspira hyodysenteriae 110 profiles 2014-04-17
Bhy_adh; Bhy_alp; Bhy_est; Bhy_gdh; Bhy_glpK; Bhy_pgm; Bhy_thi
Brachyspira intermedia 75 profiles 2014-04-17
Bin_adh; Bin_alp; Bin_est; Bin_gdh; Bin_glpK; Bin_pgm; Bin_thi
Brachyspira pilosicoli 124 profiles 2014-04-17
Bpi_adh; Bpi_alp; Bpi_est; Bpi_gdh; Bpi_glpK; Bpi_pgm; Bpi_thi
Brachyspira spp. 36 profiles 2014-04-17
Bra_adh; Bra_alp; Bra_est; Bra_gdh; Bra_glp; Bra_pgm; Bra_thi
Burkholderia cepacia complex 868 profiles 2014-04-17
atpD; gltB; gyrB; recA; lepA; phaC; trpB
Burkholderia pseudomallei 1113 profiles 2014-04-17
ace; gltB; gmhD; lepA; lipA; narK; ndh
Campylobacter concisus/curvus 77 profiles 2014-04-17
Cco_aspA; Cco_atpA; Cco_glnA; Cco_gltA; Cco_glyA; Cco_ilvD; Cco_pgm
Campylobacter fetus 44 profiles 2014-04-17
aspA; glnA; gltA; glyA; pgm; tkt; uncA
Campylobacter helveticus 8 profiles 2014-04-17
Che_aspA; Che_atpA; Che_glnA; Che_gltA; Che_glyA; Che_pgm; Che_tkt
Campylobacter hyointestinalis 109 profiles 2014-04-17
Chy_aspA; Chy_atpA; Chy_glnA; Chy_gltA; Chy_glyA; Chy_pgm; Chy_tkt
Campylobacter insulaenigrae 43 profiles 2014-04-17
Cin_aspA; Cin_atpA; Cin_glnA; Cin_glyA; Cin_pgi; Cin_pgm; Cin_tkt
Campylobacter jejuni 7137 profiles 2014-04-17
aspA; glnA; gltA; glyA; pgm; tkt; uncA
Campylobacter lanienae 69 profiles 2014-04-17
Cln_aspA; Cln_atpA; Cln_glnA; Cln_gltA; Cln_glyA; Cln_pgm; Cln_tkt
Campylobacter lari 18 profiles 2014-04-17
Cla_adk; Cla_atpA; Cla_glnA; Cla_glyA; Cla_pgi; Cla_pgm; Cla_tkt
Campylobacter sputorum 16 profiles 2014-04-17
Csp_aspA; Csp_atpA; Csp_glnA; Csp_gltA; Csp_glyA; Csp_pgm; Csp_tkt
Campylobacter upsaliensis 155 profiles 2014-04-17
Cup_adk; Cup_aspA; Cup_atpA; Cup_glnA; Cup_glyA; Cup_pgi; Cup_tkt
Candida albicans 2191 profiles 2014-04-17
AAT1a; ACC1; ADP1; MPIb; SYA1; VPS13; ZWF1b
Candida glabrata 68 profiles 2014-04-17
FKS; LEU2; NMT1; TRP1; UGP1; URA3
Candida krusei 152 profiles 2014-04-17
HIS3; LEU2; NMT1; TRP1; ADE2; LYS2D
Candida tropicalis 389 profiles 2014-04-17
ICL1; MDR1; SAPT2; SAPT4; XYR1; ZWF1a
Chlamydiales spp. 85 profiles 2014-04-17
gatA; oppA; hflX; gidA; enoA; hemN; fumC
Clonorchis sinensis 254 profiles 2014-04-17
Actin; Cox1; Cox3; Ef_1a; Its1; Nad4; Nad5; Tubulin
Clostridium botulinum 28 profiles 2014-04-16
aroE; mdh; aceK; oppB; rpoB; recA; hsp
Clostridium difficile 273 profiles 2014-04-17
adk; atpA; dxr; glyA; recA; sodA; tpi
Clostridium difficile#2 70 profiles 2014-04-17
aroE; dutA; gmk; groEL; recA; sodA; tpi
Clostridium septicum 8 profiles 2014-04-17
ddl; dnaK; glpK; groEL; gyrA; recA; tpi
Corynebacterium diphtheriae 284 profiles 2014-04-17
atpA; dnaE; dnaK; fusA; leuA; odhA; rpoB
Cronobacter spp. 253 profiles 2014-04-17
atpD; fusA; glnS; gltB; gyrB; infB; pps
Cryptococcus neoformans 53 profiles 2014-04-17
CAP59; GPD1; IGS1; LAC1; PLB1; SOD1; URA5
Enterobacter cloacae 207 profiles 2014-04-17
dnaA; fusA; gyrB; leuS; pyrG; rplB; rpoB
Enterococcus faecalis 530 profiles 2014-04-17
gdh; gyd; pstS; gki; aroE; xpt; yqil
Enterococcus faecium 892 profiles 2014-04-17
AtpA; Ddl; Gdh; PurK; Gyd; PstS; Adk
Escherichia coli#1 3919 profiles 2014-04-17
adk; fumC; gyrB; icd; mdh; purA; recA
Escherichia coli#2 616 profiles 2014-04-17
dinB; icdA; pabB; polB; putP; trpA; trpB; uidA
Flavobacterium psychrophilum 166 profiles 2014-04-17
atpA; dnaK; fumC; gyrB; murG; trpB; tuf
Haemophilus influenzae 1328 profiles 2014-04-17
adk; atpG; frdB; fucK; mdh; pgi; recA
Haemophilus parasuis 148 profiles 2014-04-17
atpD; infB; mdh; rpoB; _6pgd; g3pd; frdB
Helicobacter cinaedi 17 profiles 2014-04-17
_23S_rRNA; ppa; aspA; aroE; atpA; tkt; cdtB
Helicobacter pylori 2740 profiles 2014-04-17
atpA; efp; mutY; ppa; trpC; ureI; yphC
Helicobacter suis 25 profiles 2014-04-17
atpA; efp; mutY; ppa; trpC; ureAB; yphC
Klebsiella oxytoca 111 profiles 2014-04-17
gapA; infB; mdh; pgi; phoE; rpoB; tonB
Klebsiella pneumoniae 1567 profiles 2014-04-17
gapA; infB; mdh; pgi; phoE; rpoB; tonB
Lactobacillus casei 40 profiles 2014-04-17
fusA; ileS; lepA; leuS; pyrG; recA; recG
Lactobacillus salivarius 25 profiles 2014-04-17
pstB; rpsB; nrdB; rpoA; parB
Leptospira spp. 201 profiles 2014-04-17
glmU; pntA; sucA; tpiA; pfkB; mreA; caiB
Leptospira spp.#2 96 profiles 2014-04-17
adk; glmU; icdA; lipL32; lipL41; mreA; pntA
Listeria monocytogenes 659 profiles 2014-04-17
abcZ; bglA; cat; dapE; dat; ldh; lhkA
Mannheimia haemolytica 36 profiles 2014-04-17
adk; aroE; deoD; gapDH; gnd; mdh; zwf
Melissococcus plutonius 27 profiles 2014-04-17
argE; galK; gbpB; purR
Moraxella catarrhalis 228 profiles 2014-04-17
abcZ; adk; efp; fumC; glyBETA; mutY; ppa; trpE
Mycobacterium abscessus 26 profiles 2014-04-17
argH; cya; gnd; murC; pta; purH; rpoB
Mycobacterium massiliense 12 profiles 2014-04-17
argH; cya; gnd; murC; pta; purH; rpoB
Mycoplasma agalactiae 18 profiles 2014-04-17
dnaA; gltX; gyrB; metS; tufA
Mycoplasma hyorhinis 29 profiles 2014-04-17
dnaA; rpoB; gyrB; gltX; adk; gmk
Neisseria spp. 10777 profiles 2014-04-17
abcZ; adk; aroE; fumC; gdh; pdhC; pgm
Pantoea agglomerans 22 profiles 2014-04-17
fusA; gyrB; leuS; pyrG; rplB; rpoB
Pasteurella multocida#1 282 profiles 2014-04-17
adk; est; pmi; zwf; mdh; gdh; pgi
Pasteurella multocida#2 60 profiles 2014-04-17
adk; aroA; deoD; gdhA; g6pd; mdh; pgi
Pediococcus pentosaceus 17 profiles 2014-04-17
gyrB; pyc; pgm; leuS; glnA; dalR; pgl
Plesiomonas shigelloides 76 profiles 2014-04-17
fusA; leuS; pyrG; recG; rpoB
Porphyromonas gingivalis 138 profiles 2014-04-17
ftsQ; gpdxJ; hagB; mcmA; pepO; pga; recA
Propionibacterium acnes 119 profiles 2014-04-17
aroE; atpD; gmk; guaA; lepA; sodA; tly; CAMP2
Propionibacterium freudenreichii 46 profiles 2014-04-17
adk; fumC; gtf; pf1637; pf169; recA; rpoB
Pseudomonas aeruginosa 1754 profiles 2014-04-17
acs; aro; gua; mut; nuo; pps; trp
Pseudomonas fluorescens 98 profiles 2014-04-17
glnS; gyrB; ileS; nuoD; recA; rpoB; rpoD
Salmonella enterica 1712 profiles 2014-04-17
aroC; dnaN; hemD; hisD; purE; sucA; thrA
Sinorhizobium spp. 136 profiles 2014-04-17
asd; edd; gap; glnD; gnd; nuoE1; ordL2; recA; sucA; zwf
Staphylococcus aureus 2637 profiles 2014-04-17
arcc; aroe; glpf; gmk_; pta_; tpi_; yqil
Staphylococcus epidermidis 551 profiles 2014-04-17
arcC; aroE; gtr; mutS; pyr; tpi; yqiL
Staphylococcus pseudintermedius 358 profiles 2014-04-17
ack; cpn60; fdh; pta; purA; sar; tuf
Stenotrophomonas maltophilia 96 profiles 2014-04-17
atpD; gapA; guaA; mutM; nuoD; ppsA; recA
Streptococcus agalactiae 684 profiles 2014-04-17
adhP; pheS; atr; glnA; sdhA; glcK; tkt
Streptococcus canis 25 profiles 2014-04-17
gki; gtr; murI; mutS; recP; xpt; yqiZ
Streptococcus dysgalactiae equisimilis 80 profiles 2014-04-17
gki; gtr; murI; mutS; recP; xpt; atoB
Streptococcus gallolyticus 52 profiles 2014-04-17
aroE; glgB; nifS; p20; tkt; trpD; uvrA
Streptococcus oralis 77 profiles 2014-04-17
aroE; ddl; gdh; gki; hexB; recP; xpt
Streptococcus pneumoniae 9626 profiles 2014-04-17
aroe; gdh_; gki_; recP; spi_; xpt_; ddl_
Streptococcus pyogenes 627 profiles 2014-04-17
gki_; gtr_; muri; muts; recp; xpt_; yqil
Streptococcus suis 489 profiles 2014-04-17
aroA; cpn60; dpr; gki; mutS; recA; thrA
Streptococcus thermophilus 116 profiles 2014-04-17
ddlA; glcK; proA; ptsI; serB; tkt
Streptococcus uberis 639 profiles 2014-04-17
arcC; ddl; gki; recP; tdk; tpi; yqiL
Streptococcus zooepidemicus 319 profiles 2014-04-17
arcC; nrdE; proS; spi; tdk; tpi; yqiL
Streptomyces spp 135 profiles 2014-04-17
_16S; atpD; gyrB; recA; rpoB; trpB
Taylorella spp. 42 profiles 2014-04-17
gltA; gyrB; fh; shmt; tyrB; adk; txn
Vibrio cholerae 169 profiles 2014-04-17
adk; gyrB; mdh; metE; pntA; purM; pyrC
Vibrio parahaemolyticus 984 profiles 2014-04-17
dnaE; gyrB; recA; dtdS; pntA; pyrC; tnaA
Vibrio spp. 149 profiles 2014-04-17
gyrB; pyrH; recA; atpA
Vibrio tapetis 10 profiles 2014-04-17
atpA; fstZ; gapA; hsp60; pyrH; rctB; recA; rpoA; rpoD; topA
Vibrio vulnificus 213 profiles 2014-04-17
glp; gyrB; mdh; metG; purM; dtdS; lysA; pntA; pyrC; tnaA
Wolbachia 410 profiles 2014-04-17
gatB; coxA; hcpA; ftsZ; fbpA
Xylella fastidiosa 57 profiles 2014-04-17
leuA; petC; malF; cysG; holC; nuoL; gltT
Yersinia pseudotuberculosis 123 profiles 2014-04-17
adk; argA; aroA; glnA; thrA; tmk; trpE
Yersinia ruckeri 30 profiles 2014-04-17
glnA; gyrB; dnaJ; thrA; hsp60; recA
Yersinia spp. 154 profiles 2014-04-17
aarF; dfp; galR; glnS; hemA; rfaE; speA

MLST profiles and sequences

This page is provided as a service to enable the easy importation and linking of publicly-accessible MLST profile and allele data.

Databases hosted on other sites sometimes only make their sequences and profile definitions available as web pages, containing HTML markup code, that makes their automatic importation to offline tools difficult. Here we use a common format so that scripts can easily parse the data for local use. Links to the MLST databases that these lists are generated from are provided. These databases remain the definitive source and all ST and allele assignments are done by their respective curators.

Profiles are available in tab-delimited text format. Sequences are available in FASTA format.