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MLST allelic profiles and sequences

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The information in this table is available in XML format for automated parsing.

Database Data Retrieved
Achromobacter spp. 342 profiles 2016-12-08
nusA; rpoB; eno; gltB; lepA; nuoL; nrdA
Acinetobacter baumannii#1 1461 profiles 2016-12-08
Oxf_gltA; Oxf_gyrB; Oxf_gdhB; Oxf_recA; Oxf_cpn60; Oxf_gpi; Oxf_rpoD
Acinetobacter baumannii#2 945 profiles 2016-12-08
Pas_cpn60; Pas_fusA; Pas_gltA; Pas_pyrG; Pas_recA; Pas_rplB; Pas_rpoB
Aeromonas spp. 507 profiles 2016-12-08
gyrB; groL; gltA; metG; ppsA; recA
Anaplasma phagocytophilum 118 profiles 2016-12-08
pheS; glyA; fumC; mdh; sucA; dnaN; atpA
Arcobacter spp. 625 profiles 2016-12-08
aspA; atpA; glnA; gltA; glyA; pgm; tkt
Aspergillus fumigatus 48 profiles 2016-12-08
ANX4; BGT1; CAT1; LIP; MAT1_2; SODB; ZRF2
Bacillus cereus 1326 profiles 2016-12-08
glp; gmk; ilv; pta; pur; pyc; tpi
Bacillus licheniformis 27 profiles 2016-12-08
adk; ccpA; recF; rpoB; spo0A; sucC
Bacillus subtilis 155 profiles 2016-12-08
glpF; ilvD; pta; purH; pycA; rpoD; tpiA
Bartonella henselae 32 profiles 2016-12-08
_16S; batR; ftsZ; gltA; groEL; nlpD; ribC; rpoB
Bordetella spp. 82 profiles 2016-12-08
adk; fumC; glyA; tyrB; icd; pepA; pgm
Borrelia spp. 679 profiles 2016-12-08
clpA; clpX; nifS; pepX; pyrG; recG; rplB; uvrA
Brachyspira hampsonii 20 profiles 2016-12-08
Bha_adh; Bha_est; Bha_gdh; Bha_glpK; Bha_pgm; Bha_thi
Brachyspira hyodysenteriae 197 profiles 2016-12-08
Bhy_adh; Bhy_alp; Bhy_est; Bhy_gdh; Bhy_glpK; Bhy_pgm; Bhy_thi
Brachyspira intermedia 83 profiles 2016-12-08
Bin_adh; Bin_alp; Bin_est; Bin_gdh; Bin_glpK; Bin_pgm; Bin_thi
Brachyspira pilosicoli 124 profiles 2016-12-08
Bpi_adh; Bpi_alp; Bpi_est; Bpi_gdh; Bpi_glpK; Bpi_pgm; Bpi_thi
Brachyspira spp. 36 profiles 2016-12-08
Bra_adh; Bra_alp; Bra_est; Bra_gdh; Bra_glp; Bra_pgm; Bra_thi
Brucella spp. 72 profiles 2016-12-08
gap; aroA; glk; dnaK; gyrB; trpE; cobQ; int_hyp; omp25
Burkholderia cepacia complex 1115 profiles 2016-12-08
atpD; gltB; gyrB; recA; lepA; phaC; trpB
Burkholderia pseudomallei 1503 profiles 2016-12-08
ace; gltB; gmhD; lepA; lipA; narK; ndh
Campylobacter concisus/curvus 130 profiles 2016-12-08
Cco_aspA; Cco_atpA; Cco_glnA; Cco_gltA; Cco_glyA; Cco_ilvD; Cco_pgm
Campylobacter fetus 68 profiles 2016-12-08
Cfe_aspA; Cfe_glnA; Cfe_gltA; Cfe_glyA; Cfe_pgm; Cfe_tkt; Cfe_uncA
Campylobacter helveticus 9 profiles 2016-12-08
Che_aspA; Che_atpA; Che_glnA; Che_gltA; Che_glyA; Che_pgm; Che_tkt
Campylobacter hyointestinalis 131 profiles 2016-12-08
Chy_aspA; Chy_atpA; Chy_glnA; Chy_gltA; Chy_glyA; Chy_pgm; Chy_tkt
Campylobacter insulaenigrae 43 profiles 2016-12-08
Cin_aspA; Cin_atpA; Cin_glnA; Cin_glyA; Cin_pgi; Cin_pgm; Cin_tkt
Campylobacter jejuni 8506 profiles 2016-12-08
aspA; glnA; gltA; glyA; pgm; tkt; uncA
Campylobacter lanienae 171 profiles 2016-12-08
Cln_aspA; Cln_atpA; Cln_glnA; Cln_gltA; Cln_glyA; Cln_pgm; Cln_tkt
Campylobacter lari 32 profiles 2016-12-08
Cla_adk; Cla_atpA; Cla_glnA; Cla_glyA; Cla_pgi; Cla_pgm; Cla_tkt
Campylobacter sputorum 16 profiles 2016-12-08
Csp_aspA; Csp_atpA; Csp_glnA; Csp_gltA; Csp_glyA; Csp_pgm; Csp_tkt
Campylobacter upsaliensis 203 profiles 2016-12-08
Cup_adk; Cup_aspA; Cup_atpA; Cup_glnA; Cup_glyA; Cup_pgi; Cup_tkt
Candida albicans 3229 profiles 2016-12-08
AAT1a; ACC1; ADP1; MPIb; SYA1; VPS13; ZWF1b
Candida glabrata 77 profiles 2016-12-08
FKS; LEU2; NMT1; TRP1; UGP1; URA3
Candida krusei 188 profiles 2016-12-08
HIS3; LEU2; NMT1; TRP1; ADE2; LYS2D
Candida tropicalis 721 profiles 2016-12-08
ICL1; MDR1; SAPT2; SAPT4; XYR1; ZWF1a
Carnobacterium maltaromaticum 39 profiles 2016-12-08
dapE; ddlA; glpQ; ilvE; leuS; pyc; pyrE
Chlamydiales spp. 156 profiles 2016-12-08
gatA; oppA; hflX; gidA; enoA; hemN; fumC
Citrobacter freundii 117 profiles 2016-12-08
aspC; clpX; fadD; mdh; arcA; dnaG; lysP
Clonorchis sinensis 254 profiles 2016-12-08
Actin; Cox1; Cox3; Ef_1a; Its1; Nad4; Nad5; Tubulin
Clostridium botulinum 98 profiles 2016-12-08
aroE; mdh; aceK; oppB; rpoB; recA; hsp
Clostridium difficile 377 profiles 2016-12-08
adk; atpA; dxr; glyA; recA; sodA; tpi
Clostridium septicum 8 profiles 2016-12-08
ddl; dnaK; glpK; groEL; gyrA; recA; tpi
Corynebacterium diphtheriae 406 profiles 2016-12-08
atpA; dnaE; dnaK; fusA; leuA; odhA; rpoB
Cronobacter spp. 469 profiles 2016-12-08
atpD; fusA; glnS; gltB; gyrB; infB; pps
Enterobacter cloacae 851 profiles 2016-12-08
dnaA; fusA; gyrB; leuS; pyrG; rplB; rpoB
Enterococcus faecalis 758 profiles 2016-12-08
gdh; gyd; pstS; gki; aroE; xpt; yqiL
Enterococcus faecium 1272 profiles 2016-12-08
atpA; ddl; gdh; purK; gyd; pstS; adk
Escherichia coli#1 6593 profiles 2016-12-08
adk; fumC; gyrB; icd; mdh; purA; recA
Escherichia coli#2 757 profiles 2016-12-08
dinB; icdA; pabB; polB; putP; trpA; trpB; uidA
Flavobacterium psychrophilum 166 profiles 2016-12-08
atpA; dnaK; fumC; gyrB; murG; trpB; tuf
Haemophilus influenzae 1666 profiles 2016-12-08
adk; atpG; frdB; fucK; mdh; pgi; recA
Haemophilus parasuis 238 profiles 2016-12-08
atpD; infB; mdh; rpoB; _6pgd; g3pd; frdB
Helicobacter cinaedi 18 profiles 2016-12-08
_23S_rRNA; ppa; aspA; aroE; atpA; tkt; cdtB
Helicobacter pylori 3137 profiles 2016-12-08
atpA; efp; mutY; ppa; trpC; ureI; yphC
Helicobacter suis 120 profiles 2016-12-08
atpA; efp; mutY; ppa; trpC; ureAB; yphC
Kingella kingae 65 profiles 2016-12-08
abcZ; adk; aroE; cpn60; gdh; recA
Klebsiella oxytoca 174 profiles 2016-12-08
gapA; infB; mdh; pgi; phoE; rpoB; tonB
Klebsiella pneumoniae 2513 profiles 2016-12-08
gapA; infB; mdh; pgi; phoE; rpoB; tonB
Kudoa septempunctata 3 profiles 2016-12-08
cox1; rnl
Lactobacillus salivarius 25 profiles 2016-12-08
pstB; rpsB; nrdB; rpoA; parB
Leptospira spp. 202 profiles 2016-12-07
glmU; pntA; sucA; tpiA; pfkB; mreA; caiB
Leptospira spp.#2 106 profiles 2016-12-08
adk_2; glmU_2; icdA_2; lipL32_2; lipL41_2; mreA_2; pntA_2
Leptospira spp.#3 143 profiles 2016-12-08
adk_3; icdA_3; lipL41_3; rrs2_3; secY_3; lipL32_3
Listeria monocytogenes 1211 profiles 2016-12-08
abcZ; bglA; cat; dapE; dat; ldh; lhkA
Mannheimia haemolytica 36 profiles 2016-12-08
adk; aroE; deoD; gapDH; gnd; mdh; zwf
Melissococcus plutonius 34 profiles 2016-12-08
argE; galK; gbpB; purR
Moraxella catarrhalis 308 profiles 2016-12-08
abcZ; adk; efp; fumC; glyBETA; mutY; ppa; trpE
Mycobacterium abscessus 26 profiles 2016-12-08
argH; cya; gnd; murC; pta; purH; rpoB
Mycobacterium massiliense 12 profiles 2016-12-08
argH; cya; gnd; murC; pta; purH; rpoB
Mycoplasma agalactiae 27 profiles 2016-12-08
dnaA; gltX; gyrB; metS; tufA
Mycoplasma bovis 40 profiles 2016-12-08
adh1; gltX; gpsA; gyrB; pta2; tdk; tkt
Mycoplasma hyopneumoniae 70 profiles 2016-12-08
adk; rpoB; tpiA
Mycoplasma hyorhinis 70 profiles 2016-12-08
dnaA; rpoB; gyrB; gltX; adk; gmk
Mycoplasma iowae 23 profiles 2016-12-08
dppC; ulaA; valS; rpoC; leuS; kdpA
Mycoplasma pneumoniae 22 profiles 2016-12-08
ppa; pgm; gyrB; gmk; glyA; atpA; arcC; adk
Mycoplasma synoviae 38 profiles 2016-12-08
adk; atpG; efp; gmk; nagC; ppa; recA
Neisseria spp. 12550 profiles 2016-12-08
abcZ; adk; aroE; fumC; gdh; pdhC; pgm
Orientia tsutsugamushi 92 profiles 2016-12-08
gpsA; mdh; nrdF; nuoF; ppdK; sucB; sucD
Ornithobacterium rhinotracheale 31 profiles 2016-12-08
adk; aroE; fumC; gdhA; mdh; pgi; pmi
Paenibacillus larvae 23 profiles 2016-12-08
glpF; sigF; glpT; Natrans; rpoB; ftsA; clpC
Pasteurella multocida#1 337 profiles 2016-12-08
adk; est; pmi; zwf; mdh; gdh; pgi
Pasteurella multocida#2 64 profiles 2016-12-08
adk; aroA; deoD; gdhA; g6pd; mdh; pgi
Pediococcus pentosaceus 17 profiles 2016-12-08
gyrB; pyc; pgm; leuS; glnA; dalR; pgI
Photobacterium damselae 55 profiles 2016-12-08
glpF; gyrB; metG; pntA; pyrC; toxR
Porphyromonas gingivalis 138 profiles 2016-12-08
ftsQ; gpdxJ; hagB; mcmA; pepO; pga; recA
Propionibacterium acnes 123 profiles 2016-12-08
aroE; atpD; gmk; guaA; lepA; sodA; tly; CAMP2
Pseudomonas aeruginosa 2342 profiles 2016-12-08
acs; aro; gua; mut; nuo; pps; trp
Pseudomonas fluorescens 102 profiles 2016-12-08
glnS; gyrB; ileS; nuoD; recA; rpoB; rpoD
Riemerella anatipestifer 17 profiles 2016-12-08
dnaB; groEL; gyrA; mdh; gluD; gpi; rpoB
Salmonella enterica 3382 profiles 2016-12-08
aroC; dnaN; hemD; hisD; purE; sucA; thrA
Sinorhizobium spp. 136 profiles 2016-12-08
asd; edd; gap; glnD; gnd; nuoE1; ordL2; recA; sucA; zwf
Staphylococcus aureus 3713 profiles 2016-12-08
arcC; aroE; glpF; gmk; pta; tpi; yqiL
Staphylococcus epidermidis 625 profiles 2016-12-08
arcC; aroE; gtr; mutS; pyrR; tpiA; yqiL
Staphylococcus haemolyticus 41 profiles 2016-12-08
arcC; SH_1200; hemH; leuB; SH1431; cfxE; Ribose_ABC
Staphylococcus lugdunensis 45 profiles 2016-12-08
aroE; dat; ddl; gmk; ldh; recA; yqiL
Staphylococcus pseudintermedius 722 profiles 2016-12-08
ack; cpn60; fdh; pta; purA; sar; tuf
Stapylococcus hominis 40 profiles 2016-12-08
arcC; glpK; gtr; pta; tpiA; tuf
Stenotrophomonas maltophilia 177 profiles 2016-12-08
atpD; gapA; guaA; mutM; nuoD; ppsA; recA
Streptococcus agalactiae 997 profiles 2016-12-08
adhP; pheS; atr; glnA; sdhA; glcK; tkt
Streptococcus bovis/equinus complex (SBSEC) 66 profiles 2016-12-08
ddl; gki; glnA; mutS; mutS2; pheS; proS; pyrE; thrS; tpi
Streptococcus canis 25 profiles 2016-12-08
gki; gtr; murI; mutS; recP; xpt; yqiZ
Streptococcus dysgalactiae equisimilis 314 profiles 2016-12-08
gki; gtr; murI; mutS; recP; xpt; atoB
Streptococcus gallolyticus 108 profiles 2016-12-08
aroE; glgB; nifS; p20; tkt; trpD; uvrA
Streptococcus oralis 78 profiles 2016-12-08
aroE; ddl; gdh; gki; hexB; recP; xpt
Streptococcus pneumoniae 12698 profiles 2016-12-08
aroE; gdh; gki; recP; spi; xpt; ddl
Streptococcus pyogenes 884 profiles 2016-12-08
gki; gtr; murI; mutS; recP; xpt; yqiL
Streptococcus suis 823 profiles 2016-12-08
aroA; cpn60; dpr; gki; mutS; recA; thrA
Streptococcus thermophilus 125 profiles 2016-12-08
ddlA; glcK; proA; ptsI; serB; tkt
Streptococcus thermophilus#2 119 profiles 2016-12-08
carB; clpX; dnaA; murC; murE; pepN; pepX; pyrG; recA; rpoB
Streptococcus uberis 769 profiles 2016-12-08
arcC; ddl; gki; recP; tdk; tpi; yqiL
Streptococcus zooepidemicus 366 profiles 2016-12-08
arcC; nrdE; proS; spi; tdk; tpi; yqiL
Streptomyces spp 234 profiles 2016-12-08
_16S; atpD; gyrB; recA; rpoB; trpB
Taylorella spp. 54 profiles 2016-12-08
gltA; gyrB; fh; shmt; tyrB; adk; txn
Tenacibaculum spp. 82 profiles 2016-12-08
atpA; dnaK; glyA; gyrB; infB; rlmN; tgt
Trichomonas vaginalis 60 profiles 2016-12-08
TRYP; GLUT; FT2A; ALTS; DMRP; SHMT; M6PI
Vibrio cholerae 368 profiles 2016-12-08
adk; gyrB; mdh; metE; pntA; purM; pyrC
Vibrio parahaemolyticus 1681 profiles 2016-12-08
dnaE; gyrB; recA; dtdS; pntA; pyrC; tnaA
Vibrio spp. 149 profiles 2016-12-08
gyrB; pyrH; recA; atpA
Vibrio tapetis 10 profiles 2016-12-08
atpA; fstZ; gapA; hsp60; pyrH; rctB; recA; rpoA; rpoD; topA
Vibrio vulnificus 344 profiles 2016-12-08
glp; gyrB; mdh; metG; purM; dtdS; lysA; pntA; pyrC; tnaA
Wolbachia 470 profiles 2016-12-08
gatB; coxA; hcpA; ftsZ; fbpA
Xylella fastidiosa 77 profiles 2016-12-08
leuA; petC; malF; cysG; holC; nuoL; gltT
Yersinia pseudotuberculosis 272 profiles 2016-12-08
adk; argA; aroA; glnA; thrA; tmk; trpE
Yersinia ruckeri 30 profiles 2016-12-08
glnA; gyrB; dnaJ; thrA; hsp60; recA
Yersinia spp. 170 profiles 2016-12-08
aarF; dfp; galR; glnS; hemA; rfaE; speA

MLST profiles and sequences

This page is provided as a service to enable the easy importation and linking of publicly-accessible MLST profile and allele data.

Databases hosted on other sites sometimes only make their sequences and profile definitions available as web pages, containing HTML markup code, that makes their automatic importation to offline tools difficult. Here we use a common format so that scripts can easily parse the data for local use. Links to the MLST databases that these lists are generated from are provided. These databases remain the definitive source and all ST and allele assignments are done by their respective curators.

Profiles are available in tab-delimited text format. Sequences are available in FASTA format.