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MLST allelic profiles and sequences

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The information in this table is available in XML format for automated parsing.

Database Data Retrieved
Achromobacter spp. 165 profiles 2013-05-22
nusA; rpoB; eno; gltB; lepA; nuoL; nrdA
Acinetobacter baumannii#1 559 profiles 2013-05-22
gltA; gyrB; gdhB; recA; cpn60; gpi; rpoD
Acinetobacter baumannii#2 298 profiles 2013-05-22
cpn60; fusA; gltA; pyrG; recA; rplB; rpoB
Aeromonas spp. 252 profiles 2013-05-22
gyrB; groL; gltA; metG; ppsA; recA
Arcobacter spp. 391 profiles 2013-05-22
aspA; atpA; glnA; gltA; glyA; pgm; tkt
Aspergillus fumigatus 28 profiles 2013-05-22
ANX4; BGT1; CAT1; LIP; MAT1_2; SODB; ZRF2
Bacillus cereus 753 profiles 2013-05-22
glp; gmk; ilv; pta; pur; pyc; tpi
Bacillus licheniformis 27 profiles 2013-05-22
adk; ccpA; recF; rpoB; spo0A; sucC
Bifidobacterium 102 profiles 2013-05-22
clpC; fusA; gyrB; ileS; purF; rplB; rpoB
Bordetella spp. 61 profiles 2013-05-22
adk; fumC; glyA; tyrB; icd; pepA; pgm
Borrelia burgdorferi 441 profiles 2013-05-22
clpA; clpX; nifS; pepX; pyrG; recG; rplB; uvrA
Brachyspira hyodysenteriae 96 profiles 2013-05-22
Bhy_adh; Bhy_alp; Bhy_est; Bhy_gdh; Bhy_glpK; Bhy_pgm; Bhy_thi
Brachyspira intermedia 75 profiles 2013-05-22
Bin_adh; Bin_alp; Bin_est; Bin_gdh; Bin_glpK; Bin_pgm; Bin_thi
Brachyspira spp. 36 profiles 2013-05-22
Bra_adh; Bra_alp; Bra_est; Bra_gdh; Bra_glp; Bra_pgm; Bra_thi
Burkholderia cepacia complex 784 profiles 2013-05-22
atpD; gltB; gyrB; recA; lepA; phaC; trpB
Burkholderia pseudomallei 1018 profiles 2013-05-22
ace; gltB; gmhD; lepA; lipA; narK; ndh
Campylobacter concisus/curvus 77 profiles 2013-05-22
Cco_aspA; Cco_atpA; Cco_glnA; Cco_gltA; Cco_glyA; Cco_ilvD; Cco_pgm
Campylobacter fetus 44 profiles 2013-05-22
aspA; glnA; gltA; glyA; pgm; tkt; uncA
Campylobacter helveticus 8 profiles 2013-05-22
Che_aspA; Che_atpA; Che_glnA; Che_gltA; Che_glyA; Che_pgm; Che_tkt
Campylobacter hyointestinalis 109 profiles 2013-05-22
Chy_aspA; Chy_atpA; Chy_glnA; Chy_gltA; Chy_glyA; Chy_pgm; Chy_tkt
Campylobacter insulaenigrae 43 profiles 2013-05-22
Cin_aspA; Cin_atpA; Cin_glnA; Cin_glyA; Cin_pgi; Cin_pgm; Cin_tkt
Campylobacter jejuni 6599 profiles 2013-05-22
aspA; glnA; gltA; glyA; pgm; tkt; uncA
Campylobacter lanienae 69 profiles 2013-05-22
Cln_aspA; Cln_atpA; Cln_glnA; Cln_gltA; Cln_glyA; Cln_pgm; Cln_tkt
Campylobacter lari 18 profiles 2013-05-22
Cla_adk; Cla_atpA; Cla_glnA; Cla_glyA; Cla_pgi; Cla_pgm; Cla_tkt
Campylobacter sputorum 16 profiles 2013-05-22
Csp_aspA; Csp_atpA; Csp_glnA; Csp_gltA; Csp_glyA; Csp_pgm; Csp_tkt
Campylobacter upsaliensis 147 profiles 2013-05-22
Cup_adk; Cup_aspA; Cup_atpA; Cup_glnA; Cup_glyA; Cup_pgi; Cup_tkt
Candida albicans 2086 profiles 2013-05-22
AAT1a; ACC1; ADP1; MPIb; SYA1; VPS13; ZWF1b
Candida glabrata 68 profiles 2013-05-22
FKS; LEU2; NMT1; TRP1; UGP1; URA3
Candida krusei 152 profiles 2013-05-22
HIS3; LEU2; NMT1; TRP1; ADE2; LYS2D
Candida tropicalis 267 profiles 2013-05-22
ICL1; MDR1; SAPT2; SAPT4; XYR1; ZWF1a
Chlamydiales spp. 68 profiles 2013-05-22
gatA; oppA; hflX; gidA; enoA; hemN; fumC
Clostridium botulinum 28 profiles 2013-05-21
aroE; mdh; aceK; oppB; rpoB; recA; hsp
Clostridium difficile 191 profiles 2013-05-22
adk; atpA; dxr; glyA; recA; sodA; tpi
Clostridium difficile#2 65 profiles 2013-05-22
aroE; dutA; gmk; groEL; recA; sodA; tpi
Clostridium septicum 8 profiles 2013-05-22
ddl; dnaK; glpK; groEL; gyrA; recA; tpi
Corynebacterium diphtheriae 259 profiles 2013-05-22
atpA; dnaE; dnaK; fusA; leuA; odhA; rpoB
Cronobacter spp. 196 profiles 2013-05-22
atpD; fusA; glnS; gltB; gyrB; infB; pps
Cryptococcus neoformans 53 profiles 2013-05-22
CAP59; GPD1; IGS1; LAC1; PLB1; SOD1; URA5
Enterococcus faecalis 521 profiles 2013-05-22
gdh; gyd; pstS; gki; aroE; xpt; yqil
Enterococcus faecium 816 profiles 2013-05-22
AtpA; Ddl; Gdh; PurK; Gyd; PstS; Adk
Escherichia coli#1 3698 profiles 2013-05-22
adk; fumC; gyrB; icd; mdh; purA; recA
Escherichia coli#2 597 profiles 2013-05-22
dinB; icdA; pabB; polB; putP; trpA; trpB; uidA
Flavobacterium psychrophilum 99 profiles 2013-05-22
atpA; dnaK; fumC; gyrB; murG; trpB; tuf
Haemophilus influenzae 1268 profiles 2013-05-22
adk; atpG; frdB; fucK; mdh; pgi; recA
Haemophilus parasuis 131 profiles 2013-05-22
atpD; infB; mdh; rpoB; _6pgd; g3pd; frdB
Helicobacter cinaedi 17 profiles 2013-05-22
_23S_rRNA; ppa; aspA; aroE; atpA; tkt; cdtB
Helicobacter pylori 2560 profiles 2013-05-22
atpA; efp; mutY; ppa; trpC; ureI; yphC
Helicobacter suis 25 profiles 2013-05-22
atpA; efp; mutY; ppa; trpC; ureAB; yphC
Klebsiella pneumoniae 1209 profiles 2013-05-22
gapA; infB; mdh; pgi; phoE; rpoB; tonB
Lactobacillus casei 40 profiles 2013-05-22
fusA; ileS; lepA; leuS; pyrG; recA; recG
Lactobacillus salivarius 25 profiles 2013-05-22
pstB; rpsB; nrdB; rpoA; parB
Leptospira spp. 190 profiles 2013-05-22
glmU; pntA; sucA; tpiA; pfkB; mreA; caiB
Listeria monocytogenes 615 profiles 2013-05-22
abcZ; bglA; cat; dapE; dat; ldh; lhkA
Mannheimia haemolytica 36 profiles 2013-05-22
adk; aroE; deoD; gapDH; gnd; mdh; zwf
Moraxella catarrhalis 220 profiles 2013-05-22
abcZ; adk; efp; fumC; glyBETA; mutY; ppa; trpE
Mycobacterium abscessus 26 profiles 2013-05-22
argH; cya; gnd; murC; pta; purH; rpoB
Mycobacterium massiliense 12 profiles 2013-05-22
argH; cya; gnd; murC; pta; purH; rpoB
Mycoplasma agalactiae 18 profiles 2013-05-22
dnaA; gltX; gyrB; metS; tufA
Neisseria spp. 10224 profiles 2013-05-22
abcZ; adk; aroE; fumC; gdh; pdhC; pgm
Pantoea agglomerans 22 profiles 2013-05-22
fusA; gyrB; leuS; pyrG; rplB; rpoB
Pasteurella multocida#1 276 profiles 2013-05-22
adk; est; pmi; zwf; mdh; gdh; pgi
Pasteurella multocida#2 60 profiles 2013-05-22
adk; aroA; deoD; gdhA; g6pd; mdh; pgi
Pediococcus pentosaceus 17 profiles 2013-05-22
gyrB; pyc; pgm; leuS; glnA; dalR; pgl
Plesiomonas shigelloides 76 profiles 2013-05-22
fusA; leuS; pyrG; recG; rpoB
Porphyromonas gingivalis 138 profiles 2013-05-22
ftsQ; gpdxJ; hagB; mcmA; pepO; pga; recA
Propionibacterium acnes 62 profiles 2013-05-22
aroE; atpD; gmk; guaA; lepA; recA; sodA
Propionibacterium freudenreichii 46 profiles 2013-05-22
adk; fumC; gtf; pf1637; pf169; recA; rpoB
Pseudomonas aeruginosa 1564 profiles 2013-05-22
acs; aro; gua; mut; nuo; pps; trp
Salmonella enterica 1645 profiles 2013-05-22
aroC; dnaN; hemD; hisD; purE; sucA; thrA
Sinorhizobium spp 136 profiles 2013-05-22
asd; edd; gap; glnD; gnd; nuoE1; ordL2; recA; sucA; zwf
Staphylococcus aureus 2509 profiles 2013-05-22
arcc; aroe; glpf; gmk_; pta_; tpi_; yqil
Staphylococcus epidermidis 488 profiles 2013-05-22
arcC; aroE; gtr; mutS; pyr; tpi; yqiL
Staphylococcus pseudintermedius 251 profiles 2013-05-22
ack; cpn60; fdh; pta; purA; sar; tuf
Stenotrophomonas maltophilia 96 profiles 2013-05-22
atpD; gapA; guaA; mutM; nuoD; ppsA; recA
Streptococcus agalactiae 643 profiles 2013-05-22
adhP; pheS; atr_; glnA; sdhA; glcK; tkt_
Streptococcus canis 25 profiles 2013-05-22
gki; gtr; murI; mutS; recP; xpt; yqiZ
Streptococcus dysgalactiae equisimilis 80 profiles 2013-05-22
gki; gtr; murI; mutS; recP; xpt; atoB
Streptococcus oralis 77 profiles 2013-05-22
aroE; ddl; gdh; gki; hexB; recP; xpt
Streptococcus pneumoniae 8981 profiles 2013-05-22
aroe; gdh_; gki_; recP; spi_; xpt_; ddl_
Streptococcus pyogenes 625 profiles 2013-05-22
gki_; gtr_; muri; muts; recp; xpt_; yqil
Streptococcus suis 368 profiles 2013-05-22
aroA; cpn60; dpr; gki; mutS; recA; thrA
Streptococcus thermophilus 116 profiles 2013-05-22
ddlA; glcK; proA; ptsI; serB; tkt
Streptococcus uberis 529 profiles 2013-05-22
arcC; ddl; gki; recP; tdk; tpi; yqiL
Streptococcus zooepidemicus 308 profiles 2013-05-22
arcC; nrdE; proS; spi; tdk; tpi; yqiL
Streptomyces spp 135 profiles 2013-05-22
_16S; atpD; gyrB; recA; rpoB; trpB
Vibrio parahaemolyticus 792 profiles 2013-05-22
dnaE; gyrB; recA; dtdS; pntA; pyrC; tnaA
Vibrio tapetis 10 profiles 2013-05-22
atpA; fstZ; gapA; hsp60; pyrH; rctB; recA; rpoA; rpoD; topA
Vibrio vulnificus 144 profiles 2013-05-22
glp; gyrB; mdh; metG; purM; dtdS; lysA; pntA; pyrC; tnaA
Wolbachia 370 profiles 2013-05-22
gatB; coxA; hcpA; ftsZ; fbpA
Xylella fastidiosa 52 profiles 2013-05-22
leuA; petC; malF; cysG; holC; nuoL; gltT
Yersinia pseudotuberculosis 123 profiles 2013-05-22
adk; argA; aroA; glnA; thrA; tmk; trpE
Yersinia ruckeri 30 profiles 2013-05-22
glnA; gyrB; dnaJ; thrA; hsp60; recA
Yersinia spp. 108 profiles 2013-05-22
aarF; dfp; galR; glnS; hemA; rfaE; speA

MLST profiles and sequences

This page is provided as a service to enable the easy importation and linking of publicly-accessible MLST profile and allele data.

Databases hosted on other sites sometimes only make their sequences and profile definitions available as web pages, containing HTML markup code, that makes their automatic importation to offline tools difficult. Here we use a common format so that scripts can easily parse the data for local use. Links to the MLST databases that these lists are generated from are provided. These databases remain the definitive source and all ST and allele assignments are done by their respective curators.

Profiles are available in tab-delimited text format. Sequences are available in FASTA format.