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MLST allelic profiles and sequences

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The information in this table is available in XML format for automated parsing.

Database Data Retrieved
Achromobacter spp. 271 profiles 2015-07-07
nusA; rpoB; eno; gltB; lepA; nuoL; nrdA
Acinetobacter baumannii#1 1053 profiles 2015-07-07
Oxf_gltA; Oxf_gyrB; Oxf_gdhB; Oxf_recA; Oxf_cpn60; Oxf_gpi; Oxf_rpoD
Acinetobacter baumannii#2 718 profiles 2015-07-07
Pas_cpn60; Pas_fusA; Pas_gltA; Pas_pyrG; Pas_recA; Pas_rplB; Pas_rpoB
Aeromonas spp. 377 profiles 2015-07-07
gyrB; groL; gltA; metG; ppsA; recA
Anaplasma phagocytophilum 112 profiles 2015-07-07
pheS; glyA; fumC; mdh; sucA; dnaN; atpA
Arcobacter spp. 460 profiles 2015-07-07
aspA; atpA; glnA; gltA; glyA; pgm; tkt
Aspergillus fumigatus 48 profiles 2015-07-07
ANX4; BGT1; CAT1; LIP; MAT1_2; SODB; ZRF2
Bacillus cereus 1010 profiles 2015-07-07
glp; gmk; ilv; pta; pur; pyc; tpi
Bacillus licheniformis 27 profiles 2015-07-07
adk; ccpA; recF; rpoB; spo0A; sucC
Bacillus subtilis 155 profiles 2015-07-07
glpF; ilvD; pta; purH; pycA; rpoD; tpiA
Bifidobacterium 102 profiles 2015-03-30
clpC; fusA; gyrB; ileS; purF; rplB; rpoB
Bordetella spp. 81 profiles 2015-07-07
adk; fumC; glyA; tyrB; icd; pepA; pgm
Borrelia spp. 636 profiles 2015-07-07
clpA; clpX; nifS; pepX; pyrG; recG; rplB; uvrA
Brachyspira hampsonii 20 profiles 2015-07-07
Bha_adh; Bha_est; Bha_gdh; Bha_glpK; Bha_pgm; Bha_thi
Brachyspira hyodysenteriae 130 profiles 2015-07-07
Bhy_adh; Bhy_alp; Bhy_est; Bhy_gdh; Bhy_glpK; Bhy_pgm; Bhy_thi
Brachyspira intermedia 75 profiles 2015-07-07
Bin_adh; Bin_alp; Bin_est; Bin_gdh; Bin_glpK; Bin_pgm; Bin_thi
Brachyspira pilosicoli 124 profiles 2015-07-07
Bpi_adh; Bpi_alp; Bpi_est; Bpi_gdh; Bpi_glpK; Bpi_pgm; Bpi_thi
Brachyspira spp. 36 profiles 2015-07-07
Bra_adh; Bra_alp; Bra_est; Bra_gdh; Bra_glp; Bra_pgm; Bra_thi
Burkholderia cepacia complex 909 profiles 2015-07-07
atpD; gltB; gyrB; recA; lepA; phaC; trpB
Burkholderia pseudomallei 1362 profiles 2015-07-07
ace; gltB; gmhD; lepA; lipA; narK; ndh
Campylobacter concisus/curvus 130 profiles 2015-07-07
Cco_aspA; Cco_atpA; Cco_glnA; Cco_gltA; Cco_glyA; Cco_ilvD; Cco_pgm
Campylobacter fetus 57 profiles 2015-07-07
Cfe_aspA; Cfe_glnA; Cfe_gltA; Cfe_glyA; Cfe_pgm; Cfe_tkt; Cfe_uncA
Campylobacter helveticus 9 profiles 2015-07-07
Che_aspA; Che_atpA; Che_glnA; Che_gltA; Che_glyA; Che_pgm; Che_tkt
Campylobacter hyointestinalis 131 profiles 2015-07-07
Chy_aspA; Chy_atpA; Chy_glnA; Chy_gltA; Chy_glyA; Chy_pgm; Chy_tkt
Campylobacter insulaenigrae 43 profiles 2015-07-07
Cin_aspA; Cin_atpA; Cin_glnA; Cin_glyA; Cin_pgi; Cin_pgm; Cin_tkt
Campylobacter jejuni 7841 profiles 2015-07-07
aspA; glnA; gltA; glyA; pgm; tkt; uncA
Campylobacter lanienae 144 profiles 2015-07-07
Cln_aspA; Cln_atpA; Cln_glnA; Cln_gltA; Cln_glyA; Cln_pgm; Cln_tkt
Campylobacter lari 28 profiles 2015-07-07
Cla_adk; Cla_atpA; Cla_glnA; Cla_glyA; Cla_pgi; Cla_pgm; Cla_tkt
Campylobacter sputorum 16 profiles 2015-07-07
Csp_aspA; Csp_atpA; Csp_glnA; Csp_gltA; Csp_glyA; Csp_pgm; Csp_tkt
Campylobacter upsaliensis 203 profiles 2015-07-07
Cup_adk; Cup_aspA; Cup_atpA; Cup_glnA; Cup_glyA; Cup_pgi; Cup_tkt
Candida albicans 2903 profiles 2015-07-07
AAT1a; ACC1; ADP1; MPIb; SYA1; VPS13; ZWF1b
Candida glabrata 68 profiles 2015-07-07
FKS; LEU2; NMT1; TRP1; UGP1; URA3
Candida krusei 186 profiles 2015-07-07
HIS3; LEU2; NMT1; TRP1; ADE2; LYS2D
Candida tropicalis 501 profiles 2015-07-07
ICL1; MDR1; SAPT2; SAPT4; XYR1; ZWF1a
Carnobacterium maltaromaticum 39 profiles 2015-07-07
dapE; ddlA; glpQ; ilvE; leuS; pyc; pyrE
Chlamydiales spp. 130 profiles 2015-07-07
gatA; oppA; hflX; gidA; enoA; hemN; fumC
Citrobacter freundii 24 profiles 2015-07-07
aspC; clpX; fadD; mdh; arcA; dnaG; lysP
Clonorchis sinensis 254 profiles 2015-07-07
Actin; Cox1; Cox3; Ef_1a; Its1; Nad4; Nad5; Tubulin
Clostridium botulinum 0 profiles 2015-07-07
aroE; mdh; aceK; oppB; rpoB; recA; hsp
Clostridium difficile 304 profiles 2015-07-07
adk; atpA; dxr; glyA; recA; sodA; tpi
Clostridium difficile#2 70 profiles 2015-07-07
aroE; dutA; gmk; groEL; recA; sodA; tpi
Clostridium septicum 8 profiles 2015-07-07
ddl; dnaK; glpK; groEL; gyrA; recA; tpi
Corynebacterium diphtheriae 377 profiles 2015-07-07
atpA; dnaE; dnaK; fusA; leuA; odhA; rpoB
Cronobacter spp. 393 profiles 2015-07-07
atpD; fusA; glnS; gltB; gyrB; infB; pps
Cryptococcus neoformans 53 profiles 2015-07-07
CAP59; GPD1; IGS1; LAC1; PLB1; SOD1; URA5
Enterobacter cloacae 421 profiles 2015-07-07
dnaA; fusA; gyrB; leuS; pyrG; rplB; rpoB
Enterococcus faecalis 664 profiles 2015-07-07
gdh; gyd; pstS; gki; aroE; xpt; yqiL
Enterococcus faecium 1020 profiles 2015-07-07
atpA; ddl; gdh; purK; gyd; pstS; adk
Escherichia coli#1 4719 profiles 2015-07-07
adk; fumC; gyrB; icd; mdh; purA; recA
Escherichia coli#2 655 profiles 2015-07-07
dinB; icdA; pabB; polB; putP; trpA; trpB; uidA
Flavobacterium psychrophilum 166 profiles 2015-07-07
atpA; dnaK; fumC; gyrB; murG; trpB; tuf
Haemophilus influenzae 1442 profiles 2015-07-07
adk; atpG; frdB; fucK; mdh; pgi; recA
Haemophilus parasuis 157 profiles 2015-07-07
atpD; infB; mdh; rpoB; _6pgd; g3pd; frdB
Helicobacter cinaedi 18 profiles 2015-07-07
_23S_rRNA; ppa; aspA; aroE; atpA; tkt; cdtB
Helicobacter pylori 2905 profiles 2015-07-07
atpA; efp; mutY; ppa; trpC; ureI; yphC
Helicobacter suis 25 profiles 2015-07-07
atpA; efp; mutY; ppa; trpC; ureAB; yphC
Klebsiella oxytoca 161 profiles 2015-07-07
gapA; infB; mdh; pgi; phoE; rpoB; tonB
Klebsiella pneumoniae 1677 profiles 2015-03-30
gapA; infB; mdh; pgi; phoE; rpoB; tonB
Kudoa septempunctata 3 profiles 2015-07-07
cox1; rnl
Lactobacillus casei 40 profiles 2015-03-30
fusA; ileS; lepA; leuS; pyrG; recA; recG
Lactobacillus salivarius 25 profiles 2015-07-07
pstB; rpsB; nrdB; rpoA; parB
Leptospira spp. 202 profiles 2015-07-06
glmU; pntA; sucA; tpiA; pfkB; mreA; caiB
Leptospira spp.#2 96 profiles 2015-07-07
adk_2; glmU_2; icdA_2; lipL32_2; lipL41_2; mreA_2; pntA_2
Leptospira spp.#3 136 profiles 2015-07-07
adk_3; icdA_3; lipL41_3; rrs2_3; secY_3; lipL32_3
Listeria monocytogenes 750 profiles 2015-07-07
abcZ; bglA; cat; dapE; dat; ldh; lhkA
Mannheimia haemolytica 36 profiles 2015-07-07
adk; aroE; deoD; gapDH; gnd; mdh; zwf
Melissococcus plutonius 28 profiles 2015-07-07
argE; galK; gbpB; purR
Moraxella catarrhalis 223 profiles 2015-07-07
abcZ; adk; efp; fumC; glyBETA; mutY; ppa; trpE
Mycobacterium abscessus 26 profiles 2015-07-07
argH; cya; gnd; murC; pta; purH; rpoB
Mycobacterium massiliense 12 profiles 2015-07-07
argH; cya; gnd; murC; pta; purH; rpoB
Mycoplasma agalactiae 18 profiles 2015-07-07
dnaA; gltX; gyrB; metS; tufA
Mycoplasma bovis 32 profiles 2015-07-07
adh1; gltX; gpsA; gyrB; pta2; tdk; tkt
Mycoplasma hyorhinis 29 profiles 2015-07-07
dnaA; rpoB; gyrB; gltX; adk; gmk
Neisseria spp. 11400 profiles 2015-07-07
abcZ; adk; aroE; fumC; gdh; pdhC; pgm
Orientia tsutsugamushi 92 profiles 2015-07-07
gpsA; mdh; nrdB; nuoF; ppdK; sucB; sucD
Paenibacillus larvae 21 profiles 2015-07-07
glpF; sigF; glpT; Natrans; rpoB; ftsA; clpC
Pantoea agglomerans 22 profiles 2015-03-30
fusA; gyrB; leuS; pyrG; rplB; rpoB
Pasteurella multocida#1 292 profiles 2015-07-07
adk; est; pmi; zwf; mdh; gdh; pgi
Pasteurella multocida#2 62 profiles 2015-07-07
adk; aroA; deoD; gdhA; g6pd; mdh; pgi
Pediococcus pentosaceus 17 profiles 2015-07-07
gyrB; pyc; pgm; leuS; glnA; dalR; pgI
Plesiomonas shigelloides 76 profiles 2015-03-30
fusA; leuS; pyrG; recG; rpoB
Porphyromonas gingivalis 138 profiles 2015-07-07
ftsQ; gpdxJ; hagB; mcmA; pepO; pga; recA
Propionibacterium acnes 121 profiles 2015-07-07
aroE; atpD; gmk; guaA; lepA; sodA; tly; CAMP2
Propionibacterium freudenreichii 46 profiles 2015-04-02
adk; fumC; gtf; pf1637; pf169; recA; rpoB
Pseudomonas aeruginosa 2133 profiles 2015-07-07
acs; aro; gua; mut; nuo; pps; trp
Pseudomonas fluorescens 98 profiles 2015-07-07
glnS; gyrB; ileS; nuoD; recA; rpoB; rpoD
Salmonella enterica 1760 profiles 2015-07-07
aroC; dnaN; hemD; hisD; purE; sucA; thrA
Sinorhizobium spp. 136 profiles 2015-07-07
asd; edd; gap; glnD; gnd; nuoE1; ordL2; recA; sucA; zwf
Staphylococcus aureus 3038 profiles 2015-07-07
arcc; aroe; glpf; gmk_; pta_; tpi_; yqil
Staphylococcus epidermidis 582 profiles 2015-07-07
arcC; aroE; gtr; mutS; pyr; tpi; yqiL
Staphylococcus pseudintermedius 503 profiles 2015-07-07
ack; cpn60; fdh; pta; purA; sar; tuf
Stenotrophomonas maltophilia 113 profiles 2015-07-07
atpD; gapA; guaA; mutM; nuoD; ppsA; recA
Streptococcus agalactiae 755 profiles 2015-07-07
adhP; pheS; atr; glnA; sdhA; glcK; tkt
Streptococcus canis 25 profiles 2015-07-07
gki; gtr; murI; mutS; recP; xpt; yqiZ
Streptococcus dysgalactiae equisimilis 234 profiles 2015-07-07
gki; gtr; murI; mutS; recP; xpt; atoB
Streptococcus gallolyticus 100 profiles 2015-07-07
aroE; glgB; nifS; p20; tkt; trpD; uvrA
Streptococcus oralis 77 profiles 2015-07-07
aroE; ddl; gdh; gki; hexB; recP; xpt
Streptococcus pneumoniae 10524 profiles 2015-07-07
aroE; gdh; gki; recP; spi; xpt; ddl
Streptococcus pyogenes 784 profiles 2015-07-07
gki; gtr; murI; mutS; recP; xpt; yqiL
Streptococcus suis 656 profiles 2015-07-07
aroA; cpn60; dpr; gki; mutS; recA; thrA
Streptococcus thermophilus 116 profiles 2015-07-07
ddlA; glcK; proA; ptsI; serB; tkt
Streptococcus thermophilus#2 119 profiles 2015-07-07
carB; clpX; dnaA; murC; murE; pepN; pepX; pyrG; recA; rpoB
Streptococcus uberis 639 profiles 2015-07-07
arcC; ddl; gki; recP; tdk; tpi; yqiL
Streptococcus zooepidemicus 324 profiles 2015-07-07
arcC; nrdE; proS; spi; tdk; tpi; yqiL
Streptomyces spp 135 profiles 2015-07-07
_16S; atpD; gyrB; recA; rpoB; trpB
Taylorella spp. 49 profiles 2015-07-07
gltA; gyrB; fh; shmt; tyrB; adk; txn
Vibrio cholerae 209 profiles 2015-07-07
adk; gyrB; mdh; metE; pntA; purM; pyrC
Vibrio parahaemolyticus 1213 profiles 2015-07-07
dnaE; gyrB; recA; dtdS; pntA; pyrC; tnaA
Vibrio spp. 149 profiles 2015-07-07
gyrB; pyrH; recA; atpA
Vibrio tapetis 10 profiles 2015-07-07
atpA; fstZ; gapA; hsp60; pyrH; rctB; recA; rpoA; rpoD; topA
Vibrio vulnificus 300 profiles 2015-07-07
glp; gyrB; mdh; metG; purM; dtdS; lysA; pntA; pyrC; tnaA
Wolbachia 459 profiles 2015-07-07
gatB; coxA; hcpA; ftsZ; fbpA
Xylella fastidiosa 58 profiles 2015-07-07
leuA; petC; malF; cysG; holC; nuoL; gltT
Yersinia pseudotuberculosis 123 profiles 2015-07-07
adk; argA; aroA; glnA; thrA; tmk; trpE
Yersinia ruckeri 30 profiles 2015-07-07
glnA; gyrB; dnaJ; thrA; hsp60; recA
Yersinia spp. 170 profiles 2015-07-07
aarF; dfp; galR; glnS; hemA; rfaE; speA

MLST profiles and sequences

This page is provided as a service to enable the easy importation and linking of publicly-accessible MLST profile and allele data.

Databases hosted on other sites sometimes only make their sequences and profile definitions available as web pages, containing HTML markup code, that makes their automatic importation to offline tools difficult. Here we use a common format so that scripts can easily parse the data for local use. Links to the MLST databases that these lists are generated from are provided. These databases remain the definitive source and all ST and allele assignments are done by their respective curators.

Profiles are available in tab-delimited text format. Sequences are available in FASTA format.