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Wolbachia MLST Databases

This site uses two linked databases powered by the BIGSdb genomics platform. The sequence definition database contains allele sequence and MLST profile definitions whereas the isolate database contains provenance and epidemiological information. Further details about BIGSdb can be found in Jolley & Maiden 2010, BMC Bioinformatics 11:595.

Citation for use of the Wolbachia MLST system is Baldo et al. 2006 Appl Environ Microbiol 72:7098-7110.

As per public release guidelines, all data inserted into the MLST site as 'private' will be made public upon publication or 2 years following submission to the database, whichever comes first.

The Wolbachia MLST Database is curated by Amanda Avery (University of Rochester, USA). Please contact her with questions about uploading sequences. Curation is supported by funds to Jack Werren (University of Rochester USA) from the US National Science Foundation.

Citing the database

The preferred format for citing this website in publications is:

This publication made use of the MLST website (http://pubmlst.org/ wolbachia/) developed by Keith Jolley and sited at the University of Oxford (Jolley & Maiden 2010, BMC Bioinformatics, 11:593). The development and maintenance of this site has been funded by the Wellcome Trust.

Citation for use of the Wolbachia MLST system and database is Baldo et al. 2006, Appl Environ Microbiol 72:7098-7110. Development and curation of the Wolbachia MLST system has been supported by funds from the US National Science Foundation to Jack Werren as part of community outreach activities.

Status

Sequence database
Sequences: 3043
Profiles (MLST): 422
Last updated: 2014-08-08

Isolate database
Isolates: 1597
Last updated: 2014-07-09