Welcome to PubMLST. This site hosts publicly accessible Multilocus Sequence Typing (MLST) databases and software. We provide means of accessing these databases in common formats suitable for easy linking and importation to local resources.

• MLST allelic profiles and allele sequences from publicly accessible databases
• Software
• Data analysis - web based tools
• Databases hosted on PubMLST
  - Bacterial MLST+ Bacterial MLST
  • Acinetobacter baumannii
  • Aeromonas spp.
  • Arcobacter spp.
  • Bacillus cereus
  • Bordetella spp.
  • Brachyspira spp.
  • Burkholderia cepacia complex
  • Campylobacter fetus
  • Campylobacter spp.
  • Chlamydiales spp.
  • Clostridium botulinum
  • Clostridium difficile
  • Clostridium septicum
  • Corynebacterium diphtheriae
  • Cronobacter spp.
  • Haemophilus parasuis
  • Helicobacter pylori
  • Lactobacillus salivarius
  • Mannheimia haemolytica

  • Mycoplasma agalactiae
  • Neisseria spp.
  • Oral Streptococcus spp.
  • Pasteurella multocida
  • Porphyromonas gingivalis
  • Propionibacterium acnes
  • Pseudomonas aeruginosa
  • Sinorhizobium spp.
  • Stenotrophomonas maltophilia
  • Streptococcus agalactiae
  • Streptococcus uberis
  • Streptococcus zooepidemicus
  • Streptomyces spp.
  • Vibrio parahaemolyticus
  • Vibrio tapetis
  • Vibrio vulnificus
  • Wolbachia spp.
  • Xylella fastidiosa
  • Yersinia ruckeri
• - Eukaryote MLST+ Eukaryote MLST
  • Aspergillus fumigatus
  • Blastocystis sp.

  • Candida krusei
  • Candida tropicalis
• - Other databases+ Other databases
  • Bacteriophage MLST
  • Borrelia burgdorferi MLSA

  • Plasmid MLST
• All species MLST databases (local and externally hosted) and published schemes
• Recent publications that use or mention MLST
• News and updates
• International mirrors of this site: Primary | UK2 | UK3 | US1

Please contact us if you would like us to host or help develop a MLST database for a particular organism, or have a request for new functionality.