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PubMLST
Public databases for molecular typing
and microbial genome diversity

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A collection of open-access, curated databases that integrate population sequence data with provenance and phenotype information for over 140 different microbial species and genera.

44,119,760
Alleles
1,894,236
Isolates
1,397,362
Genomes

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Image of S. aureus
Change of data access policy

Please note that registration is now necessary to access allele, profile, and isolate data added after 31 December 2024.
Group B Streptococcus (CDC
Organisms

Choose your organism from a list of over 130 species and genera-specific databases. Access molecular typing and isolate records.
Sunburst showing genome diversity
Species ID

Use ribosomal MLST to accurately identify bacterial species from a genome assembly.
Agar plate
Submit data

We welcome submissions to the databases we host. Submissions may consist of allele sequences, MLST profiles, or isolate records with or without genome assemblies.
Neisseria meningitidis
Global Meningitis Genome Library

Global genome data on the four leading causes of bacterial meningitis: the meningococcus, the pneumococcus, Haemophilus influenzae, and Group B streptococci (GBS).
Treponema pallidum
Sexually transmitted infections

Databases for major causative agents of STIs: Neisseria gonorrhoeae, Chlamydiales spp, Mycoplasma genitalium, and Treponema pallidum
Louis Pasteur
Pasteur BIGSdb

Our close colleagues and friends at the Institut Pasteur, Paris, host databases for a range of species not available on PubMLST. The same software is used for both sites.

Contact

Get in touch with us if you have any comments or suggestions concerning the website and the databases.

Cite us

Please cite Jolley et al. 2018 Wellcome Open Res 3:124 if you use data or analysis from PubMLST in your publications.

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Wellcome Trust

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