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Pseudomonas aeruginosa MLST Database

This site uses two linked databases powered by the BIGSdb genomics platform. The sequence definition database contains allele sequence and MLST profile definitions whereas the isolate database contains provenance and epidemiological information. Further details about BIGSdb can be found in Jolley & Maiden 2010, BMC Bioinformatics 11:595.

The amendments to the P. aeruginosa database have now been completed. Where the only known isolate for a particular ST has been reassigned, this has been noted in the profiles database entry. If anyone requires a comprehensive list of the database amendments, please contact e.pinnock@micropathology.com.

This MLST scheme was developed by Chris Dowson and Barry Curran at the University of Warwick, UK.

Database curated by Elli Pinnock. Primers for aroE were designed by Daniel Jonas and Hajo Grundmann.

Citing the database

The preferred format for citing this website in publications is:

This publication made use of the Pseudomonas aeruginosa MLST website (http://pubmlst.org/ paeruginosa/) developed by Keith Jolley and sited at the University of Oxford (Jolley & Maiden 2010, BMC Bioinformatics, 11:595). The development of this site has been funded by the Wellcome Trust.

Status

Sequence database
Sequences: 1603
Profiles (MLST): 1928
Last updated: 2014-09-01

Isolate database
Isolates: 2428
Last updated: 2014-09-01