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Oral Streptococcus MLST Databases

This site uses two linked databases powered by the BIGSdb genomics platform. The sequence definition database contains allele sequence and MLST profile definitions whereas the isolate database contains provenance and epidemiological information. Further details about BIGSdb can be found in Jolley & Maiden 2010, BMC Bioinformatics 11:595.

The S. oralis and S. mutans MLST scheme were developed by Thuy Do, William Wade and David Beighton, King's College London, UK.

A second S. mutans scheme is also hosted within this database. This scheme was developed by Kazuhiko Nakano, Jinthana Lapirattanakul, and colleagues at Osaka University, Japan and Mahidol University, Thailand

Database curated by Thuy Do and Jinthana Lapirattanakul.

Citing the database

The preferred format for citing this website in publications is:

This publication made use of the oral Streptococcus MLST website (http://pubmlst.org/ oralstrep/) developed by Keith Jolley and sited at the University of Oxford (Jolley & Maiden 2010, BMC Bioinformatics, 11:595). The development of this site has been funded by the Wellcome Trust.

Status

Sequence database
Sequences: 725
Profiles:
S. mutans MLST (Do): 122
S. mutans MLST (Nakano): 173
S. oralis MLST: 77

Isolate database
Isolates: 574
Last updated: 2013-03-27