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Neisseria Sequence Typing Home Page

This site uses two linked databases powered by the BIGSdb genomics platform. The sequence definition database contains allele sequence and MLST profile definitions whereas the isolate database contains provenance and epidemiological information. Further details about BIGSdb can be found in Jolley & Maiden 2010, BMC Bioinformatics 11:595.

As well as MLST, the platform contains sequence data for other genetic targets, allowing MLST, PorA, porB, FetA, fHbp, penA, rpoB and other sequences to be queried from the same interface.

Database submissions - We are using an automated system for submitting MLST data to the database curators. Please ensure you use an up-to-date submission template. For other genetic targets please submit directly to the respective curators. Instructions | Log in

For submission of whole genome data please send assembled contigs in a FASTA file along with the standard isolate submission template to Keith Jolley.

Website and databases managed by Keith Jolley.

Citing the database

The preferred format for citing this website in publications is:

This publication made use of the Neisseria Multi Locus Sequence Typing website (http://pubmlst.org/ neisseria/) developed by Keith Jolley and sited at the University of Oxford (Jolley & Maiden 2010, BMC Bioinformatics, 11:595). The development of this site has been funded by the Wellcome Trust and European Union.

The preferred format for citing the MRF Meningococcus Genome Library is here.

Status

Sequence database
Sequences: 294158
Profiles:
MLST: 10792
rplF species: 108

Isolate database
Isolates: 28145
Last updated: 2014-04-24