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Acinetobacter baumannii MLST Databases

This site uses two linked databases powered by the BIGSdb genomics platform. The sequence definition database contains allele sequence and MLST profile definitions whereas the isolate database contains provenance and epidemiological information. Further details about BIGSdb can be found in Jolley & Maiden 2010, BMC Bioinformatics 11:595.

This scheme is described in Bartual et al. Development of a multilocus sequence typing scheme for characterization of clinical isolates of Acinetobacter baumannii. J Clin Microbiol 2005, 43:4382-4390.

Please note: Large-scale modifications have been made to the database resulting in allele and profile designation changes. These changes were necessary to incorporate sequence data from previously published works. Authors should, therefore, check whether sequence and profile designations used in manuscripts recently submitted or in preparation have changed. We apologize for any inconvenience.

Profile changes Excel | Allele changes Excel

This MLST scheme was developed by Sergio G. Bartual in the laboratory of Francisco Rodríguez-Valera (Miguel Hernandez, Alicante, Spain) and in close collaboration with Harald Seifert (University of Cologne, Germany).

Database curated by Hilmar Wisplinghoff.

Citing the database

The preferred format for citing this website in publications is:

This publication made use of the Acinetobacter baumannii MLST website (http://pubmlst.org/ abaumannii/) developed by Keith Jolley and sited at the University of Oxford (Jolley & Maiden 2010, BMC Bioinformatics, 11:595). The development of this site has been funded by the Wellcome Trust.

Status

Sequence database
Sequences: 686
Profiles (MLST): 797
Last updated: 2014-07-16

Isolate database
Isolates: 679
Last updated: 2014-03-21