MLST allelic profiles and sequences

This page contains download links to alleles and profiles that define classic MLST schemes. Where these are hosted on PubMLST, they represent a small subset of the data hosted, all of which is available via the application programming interface (API). A few of the schemes are hosted at Pasteur and the links point to their API. This list is not being maintained for new schemes - all data are available via the API and this is the recommended way to retrieve data programmatically.

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The information in this table is available in XML format for automated parsing.

DatabaseDownload
Achromobacter spp.profiles; nusA; rpoB; eno; gltB; lepA; nuoL; nrdA
Acinetobacter baumannii#1profiles; Oxf_gltA; Oxf_gyrB; Oxf_gdhB; Oxf_recA; Oxf_cpn60; Oxf_gpi; Oxf_rpoD
Acinetobacter baumannii#2profiles; Pas_cpn60; Pas_fusA; Pas_gltA; Pas_pyrG; Pas_recA; Pas_rplB; Pas_rpoB
Aeromonas spp.profiles; gyrB; groL; gltA; metG; ppsA; recA
Aggregatibacter actinomycetemcomitansprofiles; adk; atpG; frdB; mdh; pgi; recA; zwf
Anaplasma phagocytophilumprofiles; pheS; glyA; fumC; mdh; sucA; dnaN; atpA
Arcobacter spp.profiles; aspA; atpA; glnA; gltA; glyA; pgm; tkt
Aspergillus fumigatusprofiles; ANX4; BGT1; CAT1; LIP; MAT1_2; SODB; ZRF2
Bacillus cereusprofiles; glp; gmk; ilv; pta; pur; pyc; tpi
Bacillus licheniformisprofiles; adk; ccpA; recF; rpoB; spo0A; sucC
Bacillus subtilisprofiles; glpF; ilvD; pta; purH; pycA; rpoD; tpiA
Bacteroides fragilisprofiles; dnaJ; fusA; groL; prfA; recA; rpoB; rprX
Bartonella bacilliformisprofiles; ftsZ; flaA; ribC; rnpB; rpoB; bvrR; groEL
Bartonella henselaeprofiles; 16S; batR; ftsZ; gltA; groEL; nlpD; ribC; rpoB
Bartonella washoensisprofiles; 16S; ftsZ; gltA; groEL; ribC; rpoB
Bordetella spp.profiles; adk; fumC; glyA; tyrB; icd; pepA; pgm
Borrelia spp.profiles; clpA; clpX; nifS; pepX; pyrG; recG; rplB; uvrA
Brachyspira hampsoniiprofiles; Bha_adh; Bha_est; Bha_gdh; Bha_glpK; Bha_pgm; Bha_thi
Brachyspira hyodysenteriaeprofiles; Bhy_adh; Bhy_alp; Bhy_est; Bhy_gdh; Bhy_glpK; Bhy_pgm; Bhy_thi
Brachyspira intermediaprofiles; Bin_adh; Bin_alp; Bin_est; Bin_gdh; Bin_glpK; Bin_pgm; Bin_thi
Brachyspira pilosicoliprofiles; Bpi_adh; Bpi_alp; Bpi_est; Bpi_gdh; Bpi_glpK; Bpi_pgm; Bpi_thi
Brachyspira spp.profiles; Bra_adh; Bra_alp; Bra_est; Bra_gdh; Bra_glp; Bra_pgm; Bra_thi
Brucella spp.profiles; gap; aroA; glk; dnaK; gyrB; trpE; cobQ; int_hyp; omp25
Burkholderia cepacia complexprofiles; atpD; gltB; gyrB; recA; lepA; phaC; trpB
Burkholderia pseudomalleiprofiles; ace; gltB; gmhD; lepA; lipA; narK; ndh
Campylobacter concisus/curvusprofiles; Cco_aspA; Cco_atpA; Cco_glnA; Cco_gltA; Cco_glyA; Cco_ilvD; Cco_pgm
Campylobacter fetusprofiles; Cfe_aspA; Cfe_glnA; Cfe_gltA; Cfe_glyA; Cfe_pgm; Cfe_tkt; Cfe_uncA
Campylobacter helveticusprofiles; Che_aspA; Che_atpA; Che_glnA; Che_gltA; Che_glyA; Che_pgm; Che_tkt
Campylobacter hyointestinalisprofiles; Chy_aspA; Chy_atpA; Chy_glnA; Chy_gltA; Chy_glyA; Chy_pgm; Chy_tkt
Campylobacter insulaenigraeprofiles; Cin_aspA; Cin_atpA; Cin_glnA; Cin_glyA; Cin_pgi; Cin_pgm; Cin_tkt
Campylobacter jejuniprofiles; aspA; glnA; gltA; glyA; pgm; tkt; uncA
Campylobacter lanienaeprofiles; Cln_aspA; Cln_atpA; Cln_glnA; Cln_gltA; Cln_glyA; Cln_pgm; Cln_tkt
Campylobacter lariprofiles; Cla_adk; Cla_atpA; Cla_glnA; Cla_glyA; Cla_pgi; Cla_pgm; Cla_tkt
Campylobacter sputorumprofiles; Csp_aspA; Csp_atpA; Csp_glnA; Csp_gltA; Csp_glyA; Csp_pgm; Csp_tkt
Campylobacter upsaliensisprofiles; Cup_adk; Cup_aspA; Cup_atpA; Cup_glnA; Cup_glyA; Cup_pgi; Cup_tkt
Candida albicansprofiles; AAT1a; ACC1; ADP1; MPIb; SYA1; VPS13; ZWF1b
Candida glabrataprofiles; FKS; LEU2; NMT1; TRP1; UGP1; URA3
Candida kruseiprofiles; HIS3; LEU2; NMT1; TRP1; ADE2; LYS2D
Candida tropicalisprofiles; ICL1; MDR1; SAPT2; SAPT4; XYR1; ZWF1a
Candidatus Liberibacter solanacearumprofiles; adk; atpA; fbpA; ftsZ; glyA; groEL; gyrB
Carnobacterium maltaromaticumprofiles; dapE; ddlA; glpQ; ilvE; leuS; pyc; pyrE
Chlamydiales spp.profiles; gatA; oppA; hflX; gidA; enoA; hemN; fumC
Citrobacter freundiiprofiles; aspC; clpX; fadD; mdh; arcA; dnaG; lysP
Clonorchis sinensisprofiles; Actin; Cox1; Cox3; Ef_1a; Its1; Nad4; Nad5; Tubulin
Clostridioides difficileprofiles; adk; atpA; dxr; glyA; recA; sodA; tpi
Clostridium botulinumprofiles; aroE; mdh; aceK; oppB; rpoB; recA; hsp
Clostridium perfringensprofiles; colA; groEL; sodA; plc; gyrB; sigK; pgk; nadA
Clostridium septicumprofiles; ddl; dnaK; glpK; groEL; gyrA; recA; tpi
Corynebacterium diphtheriaeprofiles; atpA; dnaE; dnaK; fusA; leuA; odhA; rpoB
Cronobacter spp.profiles; atpD; fusA; glnS; gltB; gyrB; infB; pps
Cutibacterium acnesprofiles; aroE; atpD; gmk; guaA; lepA; sodA; tly; CAMP2
Dichelobacter nodosusprofiles; dcd; dtdA; folK; recR; rlmH; rplI; tsaE
Edwardsiella spp.profiles; adk; atpD; dnaJ; gapA; glnA; hsp60; phoR; pyrG; rpoA; tuf
Enterobacter cloacaeprofiles; dnaA; fusA; gyrB; leuS; pyrG; rplB; rpoB
Enterococcus faecalisprofiles; gdh; gyd; pstS; gki; aroE; xpt; yqiL
Enterococcus faeciumprofiles; atpA; ddl; gdh; purK; gyd; pstS; adk
Escherichia coli#1profiles; adk; fumC; gyrB; icd; mdh; purA; recA
Escherichia coli#2profiles; dinB; icdA; pabB; polB; putP; trpA; trpB; uidA
Flavobacterium psychrophilumprofiles; atpA; dnaK; fumC; gyrB; murG; trpB; tuf
Gallibacterium anatisprofiles; adk; atpD; fumC; gyrB; infB; mdh; recN; thdF
Geotrichum spp.profiles; NUP116; URA1; URA3; SAPT4; PLB3
Glaesserella parasuisprofiles; atpD; infB; mdh; rpoB; 6pgd; g3pd; frdB
Haemophilus influenzaeprofiles; adk; atpG; frdB; fucK; mdh; pgi; recA
Helicobacter cinaediprofiles; 23S_rRNA; ppa; aspA; aroE; atpA; tkt; cdtB
Helicobacter pyloriprofiles; atpA; efp; mutY; ppa; trpC; ureI; yphC
Helicobacter suisprofiles; atpA; efp; mutY; ppa; trpC; ureAB; yphC
Kingella kingaeprofiles; abcZ; adk; aroE; cpn60; gdh; recA
Klebsiella aerogenesprofiles; dnaA; fusA; gyrB; leuS; pryG; rplB; rpoB
Klebsiella oxytocaprofiles; gapA; infB; mdh; pgi; phoE; rpoB; tonB
Klebsiella pneumoniaeprofiles; gapA; infB; mdh; pgi; phoE; rpoB; tonB
Kudoa septempunctataprofiles; cox1; rnl
Lactobacillus salivariusprofiles; pstB; rpsB; nrdB; rpoA; parB
Lactococcus lactis bacteriophageprofiles; terL; mcp; mtp; tmp; lys
Leptospira spp.profiles; glmU_1; pntA_1; sucA_1; tpiA_1; pfkB_1; mreA_1; caiB_1
Leptospira spp.#2profiles; adk_2; glmU_2; icdA_2; lipL32_2; lipL41_2; mreA_2; pntA_2
Leptospira spp.#3profiles; adk_3; icdA_3; lipL41_3; rrs2_3; secY_3; lipL32_3
Listeria monocytogenesprofiles; abcZ; bglA; cat; dapE; dat; ldh; lhkA
Macrococcus canisprofiles; ack; cpn60; fdh; pta; purA; sar; tuf
Macrococcus caseolyticusprofiles; ack; cpn60; fdh; pta; purA; sar; tuf
Mammaliicoccus sciuriprofiles; ack; aroE; ftsZ; glpK; gmk; pta1; tpiA
Mannheimia haemolyticaprofiles; adk; aroE; deoD; gapDH; gnd; mdh; zwf
Melissococcus plutoniusprofiles; argE; galK; gbpB; purR
Moraxella catarrhalisprofiles; abcZ; adk; efp; fumC; glyBeta; mutY; ppa; trpE
Mycobacteria spp.profiles; S14Z; L35; S19; L19; S12; S8; L16; S7
Mycobacteroides abscessusprofiles; argH; cya; gnd; murC; pta; purH; rpoB
Mycoplasma agalactiaeprofiles; dnaA; gltX; gyrB; metS; tufA
Mycoplasma anserisalpingitidisprofiles; atpG; fusA; pgiB; plsY; uvrA
Mycoplasma bovisprofiles; dnaA; gltX; gpsA; gyrB; pta2; tdk; tkt
Mycoplasma flocculareprofiles; adk; rpoB; tpiA
Mycoplasma gallisepticum#1profiles; atpG; dppC; DUF3196; lgT; mraW; plsC; ugpA
Mycoplasma gallisepticum#2profiles; atpG2; dnaA; fusA; rpoB; ruvB; uvrA
Mycoplasma hominisprofiles; uvrA; gyrB; ftsY; tuf; gap
Mycoplasma hyopneumoniaeprofiles; adk; rpoB; tpiA
Mycoplasma hyorhinisprofiles; dnaA; rpoB; gyrB; gltX; adk; gmk
Mycoplasma iowaeprofiles; dppC; ulaA; valS; rpoC; leuS; kdpA
Mycoplasma pneumoniaeprofiles; ppa; pgm; gyrB; gmk; glyA; atpA; arcC; adk
Mycoplasma synoviaeprofiles; adk; atpG; efp; gmk; nagC; ppa; recA
Neisseria spp.profiles; abcZ; adk; aroE; fumC; gdh; pdhC; pgm
Orientia tsutsugamushiprofiles; gpsA; mdh; nrdB; nuoF; ppdK; sucB; sucD
Ornithobacterium rhinotrachealeprofiles; adk; aroE; fumC; gdhA; mdh; pgi; pmi
Paenibacillus larvaeprofiles; glpF; sigF; glpT; Natrans; rpoB; ftsA; clpC
Pasteurella multocida#1profiles; RIRDC_adk; RIRDC_est; RIRDC_pmi; RIRDC_zwf; RIRDC_mdh; RIRDC_gdh; RIRDC_pgi
Pasteurella multocida#2profiles; mh_adk; mh_aroA; mh_deoD; mh_gdhA; mh_g6pd; mh_mdh; mh_pgi
Pediococcus pentosaceusprofiles; gyrB; pyc; pgm; leuS; glnA; dalR; pgI
Photobacterium damselaeprofiles; glpF; gyrB; metG; pntA; pyrC; toxR
Piscirickettsia salmonisprofiles; dnaK; efp; fumC; glyA; murG; rpoD; trpB
Porphyromonas gingivalisprofiles; ftsQ; gpdxJ; hagB; mcmA; pepO; pga; recA
Pseudomonas aeruginosaprofiles; acsA; aroE; guaA; mutL; nuoD; ppsA; trpE
Pseudomonas fluorescensprofiles; glnS; gyrB; ileS; nuoD; recA; rpoB; rpoD
Pseudomonas putidaprofiles; argS; gyrB; ileS; nuoC; ppsA; recA; rpoB; rpoD
Rhodococcus spp.profiles; gapdh; tpi; mdh; icl; rpoB; recA; adk
Riemerella anatipestiferprofiles; dnaB; groEL; gyrA; mdh; gluD; gpi; rpoB
Salmonella entericaprofiles; aroC; dnaN; hemD; hisD; purE; sucA; thrA
Saprolegnia parasiticaprofiles; ALTS1; COX1; GLUT; NAD1; RPB2; SHMT; TUBB
Shewanella spp.profiles; 16S_rRNA; adk; atpB; guaA; gyrB; mdh; recA; rpoS
Sinorhizobium spp.profiles; asd; edd; gap; glnD; gnd; nuoE1; ordL2; recA; sucA; zwf
Staphylococcus aureusprofiles; arcC; aroE; glpF; gmk; pta; tpi; yqiL
Staphylococcus chromogenesprofiles; arcC; hutU; fumC; dnaJ; glpF; menF; pta
Staphylococcus epidermidisprofiles; arcC; aroE; gtr; mutS; pyrR; tpiA; yqiL
Staphylococcus haemolyticusprofiles; arcC; SH_1200; hemH; leuB; SH1431; cfxE; Ribose_ABC
Staphylococcus hominisprofiles; arcC; glpK; gtr; pta; tpiA; tuf
Staphylococcus lugdunensisprofiles; aroE; dat; ddl; gmk; ldh; recA; yqiL
Staphylococcus pseudintermediusprofiles; ack; cpn60; fdh; pta; purA; sar; tuf
Stenotrophomonas maltophiliaprofiles; atpD; gapA; guaA; mutM; nuoD; ppsA; recA
Streptococcus agalactiaeprofiles; adhP; pheS; atr; glnA; sdhA; glcK; tkt
Streptococcus bovis/equinus complex (SBSEC)profiles; ddl; gki; glnA; mutS; mutS2; pheS; proS; pyrE; thrS; tpi
Streptococcus canisprofiles; gki; gtr; murI; mutS; recP; xpt; yqiZ
Streptococcus dysgalactiae equisimilisprofiles; gki; gtr; murI; mutS; recP; xpt; atoB
Streptococcus gallolyticusprofiles; aroE; glgB; nifS; p20; tkt; trpD; uvrA
Streptococcus oralisprofiles; aroE; ddl; gdh; gki; hexB; recP; xpt
Streptococcus pneumoniaeprofiles; aroE; gdh; gki; recP; spi; xpt; ddl
Streptococcus pyogenesprofiles; gki; gtr; murI; mutS; recP; xpt; yqiL
Streptococcus suisprofiles; aroA; cpn60; dpr; gki; mutS; recA; thrA
Streptococcus thermophilusprofiles; ddlA; glcK; proA; ptsI; serB; tkt
Streptococcus thermophilus#2profiles; carB; clpX; dnaA; murC; murE; pepN; pepX; pyrG; recA; rpoB
Streptococcus uberisprofiles; arcC; ddl; gki; recP; tdk; tpi; yqiL
Streptococcus zooepidemicusprofiles; arcC; nrdE; proS; spi; tdk; tpi; yqiL
Streptomyces sppprofiles; 16S; atpD; gyrB; recA; rpoB; trpB
Taylorella spp.profiles; gltA; gyrB; fh; shmt; tyrB; adk; txn
Tenacibaculum spp.profiles; atpA; dnaK; glyA; gyrB; infB; rlmN; tgt
Treponema pallidumprofiles; TP0136; TP0548; TP0705
Trichomonas vaginalisprofiles; TRYP; GLUT; FT2A; ALTS; DMRP; SHMT; M6PI
Ureaplasma spp.profiles; ftsH; rpL22; thrS; valS
Vibrio choleraeprofiles; adk; gyrB; mdh; metE; pntA; purM; pyrC
Vibrio cholerae#2profiles; asd; dnaE; lap; pgm; recA
Vibrio parahaemolyticusprofiles; dnaE; gyrB; recA; dtdS; pntA; pyrC; tnaA
Vibrio spp.profiles; gyrB; pyrH; recA; atpA
Vibrio tapetisprofiles; atpA; fstZ; gapA; hsp60; pyrH; rctB; recA; rpoA; rpoD; topA
Vibrio vulnificusprofiles; glp; gyrB; mdh; metG; purM; dtdS; lysA; pntA; pyrC; tnaA
Wolbachiaprofiles; gatB; coxA; hcpA; ftsZ; fbpA
Xylella fastidiosaprofiles; leuA; petC; malF; cysG; holC; nuoL; gltT
Yersinia pseudotuberculosisprofiles; adk; argA; aroA; glnA; thrA; tmk; trpE
Yersinia ruckeriprofiles; glnA; gyrB; dnaJ; thrA; hsp60; recA