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PubMLST
Public databases for molecular typing
and microbial genome diversity

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Salmonella spp.

Source of isolates submitted to the Salmonella spp. database

Please note that PubMLST is not the authoritative database for MLST, cgMLST, or wgMLST for this organism. We synchronize alleles and scheme definitions for these schemes from Enterobase. New alleles and profiles need to be submitted to Enterobase for assignment - we cannot assign them.

Typing

The typing database contains nomenclature - allele definitions that provide an identifier for every unique allele sequence, and MLST profiles that index each unique combination of alleles with a sequence type (ST).

Allele sequences:
10,241,230
Last updated:
2025-05-09

Isolate collection

The isolate database consists of isolate records containing provenance and phenotype information linked to molecular typing information. These records may also include genome assemblies.

Isolates:
21,566
Last updated:
2025-04-28

Genome collection

A subset of records within the isolate database may contain genomes assemblies. You can access these from the isolate database by filtering on sequence bin size in a query.

Genomes:
21,559
Last updated:
2025-04-04

Contact

Get in touch with us if you have any comments or suggestions concerning the website and the databases.

Cite us

Please cite Jolley et al. 2018 Wellcome Open Res 3:124 if you use data or analysis from PubMLST in your publications.

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Wellcome Trust

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