Neisseria FetA variable region typing

The FetA variable region databases has been incorporated in to the Neisseria MLST sequence definition database, allowing querying from a unified interface.

Information about the FetA variable region can be found in Thompson et al., Microbiology 2003 149:1849-58.

Neisseria Typing Home
Primers and sequencing protocol
VR sequences
Identify FetA variable regions
- Single sequence query
- Batch sequence query
Search by sequence attributes
Submission of new variant sequences
Submission history

Download allele sequences from Thompson et al. 2003 paper

Database statistics

FetA VR: 639 variants (last updated: 2018-11-06)

Citing the database

The preferred format for citing this website in publications is:

This publication made use of the Neisseria Multi Locus Sequence Typing website (https://pubmlst.org/ neisseria/) developed by Keith Jolley and sited at the University of Oxford (Jolley et al. Wellcome Open Res 2018, 3:124 [version 1; referees: 2 approved]). The development of this site has been funded by the Wellcome Trust and European Union.

The preferred format for citing the MRF Meningococcus Genome Library is here.

Status

Sequence database
Sequences: 1,209,168
Profiles:
MLST: 13,975
rplF species: 165
beta lactamase plasmid: 18
Bexsero Antigen Sequence Typing (BAST): 3,002
Conjugative Plasmid: 242
Cryptic Plasmid: 96
N. gonorrhoeae cgMLST v1.0: 4,884
NG STAR: 831
N. meningitidis cgMLST v1.0: 14,477

Isolate database
Isolates: 47,837
Last updated: 2018-11-19