Treponema pallidum subsp. pallidum MLST Databases

This site uses two linked databases powered by the BIGSdb genomics platform. The sequence definition database contains allele sequence and MLST profile definitions whereas the isolate database contains provenance and epidemiological information. Further details about BIGSdb can be found in Jolley & Maiden 2010, BMC Bioinformatics 11:595.

Information
- Primers used for amplification and sequencing
Databases
- Sequence/profile definitions database
- Isolates database
Policy document
Submission of data

This MLST scheme was developed by Linda Grillová and colleagues at the Masaryk University, Brno, Czech Republic and University of Zurich, Zurich, Switzerland. It is described in Grillová et al. 2018 PLoS One 13:e0200773.

Database curated by Linda Grillová.

Citing the database

The preferred format for citing this website in publications is:

This publication made use of the Treponema pallidum MLST website (https://pubmlst.org/ tpallidum/) sited at the University of Oxford (Jolley et al. Wellcome Open Res 2018, 3:124 [version 1; referees: 2 approved]). The development of this site has been funded by the Wellcome Trust.

Status

Sequence database
Sequences: 68
Profiles (MLST): 47
Last updated: 2018-09-06

Isolate database
Isolates: 681
Last updated: 2018-10-23