Recent database update activity
2025-05-14:- Campylobacter jejuni/coli: 31 C. jejuni / C. coli cgMLST v1 profiles; 53 C. jejuni / C. coli cgMLST v2 profiles
- Haemophilus influenzae: 21 isolates; 11 genomes; 4 alleles; 16 MLST profiles
- Neisseria spp.: 6 isolates; 3 genomes; 1,648 alleles; 24 N. gonorrhoeae cgMLST v1.0 profiles; 6 N. gonorrhoeae cgMLST v2 profiles; 22 N. meningitidis cgMLST v3 profiles
- Salmonella spp.: 5 SalmcgMLST v1.0 profiles
- Staphylococcus aureus: 1 MLST profile
- Streptococcus pneumoniae: 2 cgMLST profiles
- Vibrio parahaemolyticus: 869 alleles
- Campylobacter jejuni/coli: 4,777 isolates; 5,818 alleles; 215 C. jejuni / C. coli cgMLST v1 profiles; 203 C. jejuni / C. coli cgMLST v2 profiles
- Chlamydiales spp.: 5 isolates; 3 alleles
- Cronobacter spp.: 1 isolate; 1 genome; 48 alleles
- Enterobacter spp.: 4 alleles
- Enterococcus faecium: 1 isolate; 1 MLST profile
- Escherichia spp.: 17,931 alleles; 4 MLST (Achtman) profiles
- Glaesserella parasuis: 1 allele
- Haemophilus influenzae: 22 alleles
- Mycobacteria spp.: 20 alleles
- Neisseria spp.: 132 isolates; 17 genomes; 1,950 alleles; 1 MLST profile; 128 N. gonorrhoeae cgMLST v1.0 profiles; 138 N. gonorrhoeae cgMLST v2 profiles; 3 N. meningitidis cgMLST v3 profiles
- Ribosomal MLST: 26 isolates; 19 alleles; 8 rMLST profiles
- Salmonella spp.: 8 isolates; 7 genomes
- Staphylococcus aureus: 1 isolate; 23 alleles
- Stenotrophomonas maltophilia: 58 isolates; 41 MLST profiles
- Streptococcus pneumoniae: 308 isolates; 256 alleles; 176 cgMLST profiles; 2 MLST profiles
- Vibrio cholerae: 31 alleles
- Vibrio parahaemolyticus: 165 isolates; 165 genomes; 27,691 alleles; 26 cgMLST profiles; 36 MLST profiles
- Achromobacter spp.: 4 isolates; 10 alleles; 1 MLST profile
- Burkholderia cepacia complex: 7 isolates; 11 alleles; 2 MLST profiles
- Campylobacter jejuni/coli: 54 isolates; 359 genomes; 1 allele; 3 MLST profiles
- Escherichia spp.: 10 alleles; 18 MLST (Achtman) profiles
- Glaesserella parasuis: 1 allele; 1 MLST profile
- Haemophilus influenzae: 35 isolates; 35 genomes; 456 alleles; 105 cgMLST v1 profiles; 2 MLST profiles
- Helicobacter pylori: 25 alleles
- Mannheimia haemolytica: 3 isolates; 3 genomes
- Neisseria spp.: 2 genomes; 2,107 N. meningitidis cgMLST v3 profiles
- Ribosomal MLST: 5 isolates; 108 alleles; 62 rMLST profiles
- Salmonella spp.: 19 alleles; 22 MLST profiles
- Stenotrophomonas maltophilia: 48 alleles
- Streptococcus pneumoniae: 33 isolates; 1 genome; 40 alleles; 40 MLST profiles
- Vibrio cholerae: 10 alleles
- Vibrio parahaemolyticus: 30 isolates; 30 genomes; 1,316 alleles; 25 cgMLST profiles; 1 MLST profile