Taxonomic coverage of the rMLST databases
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Click isolate links to view records (registration required). Click tree links to display Neighbour-joining tree of rSTs belonging to node - trees are pre-generated using RapidNJ and displayed using NCBI Tree Viewer.
Please note that some taxa may appear more than once in the hierarchy. This is caused by a delay in propagating changes in taxonomic placement.
- Abditibacteriota (isolates:1; rSTs:1)
- Acidobacteriota (isolates:113; rSTs:93 )
- Actinomycetota (isolates:46763; rSTs:24409)
- Aquificota (isolates:38; rSTs:29 )
- Armatimonadota (isolates:7; rSTs:6 )
- Atribacterota (isolates:4; rSTs:4 )
- Bacillota (isolates:328023; rSTs:91683)
- Bacteroidota (isolates:13473; rSTs:7408)
- Balneolota (isolates:26; rSTs:24 )
- Bdellovibrionota (isolates:67; rSTs:45 )
- Caldisericota (isolates:1; rSTs:1)
- Calditrichota (isolates:2; rSTs:1)
- Campylobacterota (isolates:107579; rSTs:29837)
- Candidatus Absconditibacteriota (isolates:2)
- Candidatus Aerophobetes (isolates:1)
- Candidatus Altimarinota (isolates:1)
- Candidatus Aminicenantota (isolates:1; rSTs:1)
- Candidatus Auribacterota (isolates:1)
- Candidatus Bipolaricaulota (isolates:1; rSTs:1)
- Candidatus Calescamantes (isolates:1)
- Candidatus Cloacimonadota (isolates:2; rSTs:2)
- Candidatus Cryosericota (isolates:7)
- Candidatus Deferrimicrobiota (isolates:1; rSTs:1)
- Candidatus Fermentibacterota (isolates:4; rSTs:1)
- Candidatus Fervidibacterota (isolates:3)
- Candidatus Hydrogenedentota (isolates:1)
- Candidatus Kryptoniota (isolates:20; rSTs:3 )
- Candidatus Latescibacterota (isolates:1)
- Candidatus Lithacetigenota (isolates:5)
- Candidatus Melainabacteria (isolates:6; rSTs:3 )
- Candidatus Methylomirabilota (isolates:4; rSTs:3 )
- Candidatus Microgenomates (isolates:1)
- Candidatus Moduliflexota (isolates:2; rSTs:2)
- Candidatus Omnitrophota (isolates:3; rSTs:2)
- Candidatus Paceibacterota (isolates:1)
- Candidatus Saccharibacteria (isolates:28; rSTs:13 )
- Candidatus Tectimicrobiota (isolates:3)
- Candidatus Tharpellota (isolates:3)
- Chlamydiota (isolates:1234; rSTs:535 )
- Chlorobiota (isolates:35; rSTs:29 )
- Chloroflexota (isolates:129; rSTs:100 )
- Chrysiogenota (isolates:6; rSTs:4 )
- Coprothermobacterota (isolates:4; rSTs:4 )
- Cyanobacteriota (isolates:956; rSTs:653 )
- Deferribacterota (isolates:18; rSTs:14 )
- Deinococcota (isolates:333; rSTs:211 )
- Dictyoglomota (isolates:4; rSTs:4 )
- Elusimicrobiota (isolates:4; rSTs:3 )
- Fibrobacterota (isolates:46; rSTs:41 )
- Fusobacteriota (isolates:579; rSTs:385 )
- Gemmatimonadota (isolates:15; rSTs:7 )
- Ignavibacteriota (isolates:5; rSTs:5 )
- Kiritimatiellota (isolates:5; rSTs:4 )
- Lentisphaerota (isolates:9; rSTs:6 )
- Mycoplasmatota (isolates:2311; rSTs:1315 )
- Myxococcota (isolates:207; rSTs:174 )
- Nitrospinota (isolates:6; rSTs:3 )
- Nitrospirota (isolates:41; rSTs:32 )
- Planctomycetota (isolates:203; rSTs:161 )
- Pseudomonadota (isolates:416485; rSTs:128449)
- Rhodothermota (isolates:261; rSTs:174 )
- Spirochaetota (isolates:2764; rSTs:1076 )
- Synergistota (isolates:50; rSTs:41 )
- Thermodesulfobacteriota (isolates:409; rSTs:341 )
- Thermodesulfobiota (isolates:3; rSTs:2)
- Thermomicrobiota (isolates:6; rSTs:4 )
- Thermosulfidibacterota (isolates:1; rSTs:1)
- Thermotogota (isolates:117; rSTs:89 )
- Verrucomicrobiota (isolates:438; rSTs:207 )
- Vulcanimicrobiota (isolates:1)