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Streptococcus suis MLST Databases

This site uses two linked databases powered by the BIGSdb genomics platform. The sequence definition database contains allele sequence and MLST profile definitions whereas the isolate database contains provenance and epidemiological information. Further details about BIGSdb can be found in Jolley & Maiden 2010, BMC Bioinformatics 11:595.

We are looking for new curators for this database. If you use this database regularly and would like to assist in the curation effort, please contact Keith Jolley. Please see the brief overview of the role of a curator for more details of the role.

This MLST scheme was developed by Samantha King and Adrian Whatmore at the Univeristy of Warwick, UK. It is described in King et al. 2002 Development of a multilocus sequence typing scheme for Streptococcus suis: Identification of virulent clones and potential capsular serotype exchange. J Clin Microbiol 40:3671-3680.

Database temporarily curated by Keith Jolley.

Citing the database

The preferred format for citing this website in publications is:

This publication made use of the Streptococcus suis MLST website (https://pubmlst.org/ ssuis/) sited at the University of Oxford (Jolley et al. Wellcome Open Res 2018, 3:124 [version 1; referees: 2 approved]). The development of this site has been funded by the Wellcome Trust.

Status

Sequence database
Sequences: 2,195
Profiles (MLST): 1,132
Last updated: 2018-12-14

Isolate database
Isolates: 2,085
Last updated: 2018-12-14