Vibrio cholerae

Source of isolates submitted to the Vibrio cholerae database

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The non O1/O139 MLST scheme is described in Octavia et al. 2013 PLoS One 8:e65342. This is curated by sophie.octaviagmail.com (Sophie Octavia).

Primers

The O1/O139 MLST scheme was developed by amol.kanampalliwargmail.com (Amol Kanampalliwar) and colleagues in the laboratory of Dr. D. V. Singh at the Institute of Life Sciences, Bhubaneswar, India.

Primers

The cgMLST scheme is described in Liang et al. 2020 J Bacteriol 202:e00086-20.This is curated by kliangualberta.ca (Kevin Liang).

The preferred citation for this website is:

Jolley et al. Wellcome Open Res 2018, 3:124 [version 1; referees: 2 approved].

Typing

The typing database contains nomenclature - allele definitions that provide an identifier for every unique allele sequence, and MLST profiles that index each unique combination of alleles with a sequence type (ST).

Isolate collection

The isolate database consists of isolate records containing provenance and phenotype information linked to molecular typing information. These records may also include genome assemblies.

Genome collection

A subset of records within the isolate database may contain genomes assemblies. You can access these from the isolate database by filtering on sequence bin size in a query.