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PubMLST
Public databases for molecular typing
and microbial genome diversity

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  3. Streptococcus pyogenes

Streptococcus pyogenes

Source of isolates submitted to the Streptococcus pyogenes database
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This MLST scheme is described in Enright et al. 2001 Infect Immun 69:2416-27.

Pilin, M protein, and antibiotic resistance genotyping schemes are currently under development.

Database curated by debra_bessenatnymc.edu (Debra Bessen).

  • Primers
  • Assignment of emm type
The preferred citation for this website is:

Jolley et al. Wellcome Open Res 2018, 3:124 [version 1; referees: 2 approved].

Typing

The typing database contains nomenclature - allele definitions that provide an identifier for every unique allele sequence, and MLST profiles that index each unique combination of alleles with a sequence type (ST).

Allele sequences:
3,860
Last updated:
2022-06-15

Isolate collection

The isolate database consists of isolate records containing provenance and phenotype information linked to molecular typing information. These records may also include genome assemblies.

Isolates:
4,154
Last updated:
2022-06-02

Genome collection

A subset of records within the isolate database may contain genomes assemblies. You can access these from the isolate database by filtering on sequence bin size in a query.

Genomes:
10
Last updated:
2022-04-04

Contact

Get in touch with us if you have any comments or suggestions concerning the website and the databases.

Cite us

Please cite Jolley et al. 2018 Wellcome Open Res 3:124 if you use data or analysis from PubMLST in your publications.

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Supported by

Wellcome Trust

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