Oral Streptococcus spp.

Source of isolates submitted to the Oral Streptococcus spp. database
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The S. oralis and S. mutans MLST schemes were developed by Thuy Do, William Wade and David Beighton, King's College London, UK (Do et al. 2009 Microbiology 155:2593-2602; Do et al. 2010 PLoS One 5:e9073)

A second S. mutans scheme is also hosted within this database. This scheme was developed by Kazuhiko Nakano, Jinthana Lapirattanakul, and colleagues at Osaka University, Japan and Mahidol University, Thailand (Lapirattanakul et al. 2008 Caries Res 42:466-74).

Database curated by n.t.doatleeds.ac.uk (Thuy Do) and jinthana.lapatmahidol.ac.th (Jinthana Lapirattanakul).

The preferred citation for this website is:

Jolley et al. Wellcome Open Res 2018, 3:124 [version 1; referees: 2 approved].

Typing

The typing database contains nomenclature - allele definitions that provide an identifier for every unique allele sequence, and MLST profiles that index each unique combination of alleles with a sequence type (ST).

Allele sequences:
932
Last updated:
2024-07-10

Isolate collection

The isolate database consists of isolate records containing provenance and phenotype information linked to molecular typing information. These records may also include genome assemblies.

Isolates:
2,905
Last updated:
2024-12-05

Genome collection

A subset of records within the isolate database may contain genomes assemblies. You can access these from the isolate database by filtering on sequence bin size in a query.

Genomes:
2,214
Last updated:
2022-04-07