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PubMLST
Public databases for molecular typing
and microbial genome diversity

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  3. Citrobacter spp.

Citrobacter spp.

Source of isolates submitted to the Citrobacter spp. database
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The MLST scheme hosted in this database was developed by Li Bai and colleagues and is described in Bai et al. 2012 PLoS One 7:e33054.

Database is curated by piowieatumb.edu.pl (Piotr Wieczorek), and piotr.majewskiatumb.edu.pl (Piotr Majewski) at Department of Microbiological Diagnostics and Infectious Immunology, Medical University of Bialystok, Poland.

  • Primers
The preferred citation for this website is:

Jolley et al. Wellcome Open Res 2018, 3:124 [version 1; referees: 2 approved].

Typing

The typing database contains nomenclature - allele definitions that provide an identifier for every unique allele sequence, and MLST profiles that index each unique combination of alleles with a sequence type (ST).

Allele sequences:
1,457
Last updated:
2021-06-16

Isolate collection

The isolate database consists of isolate records containing provenance and phenotype information linked to molecular typing information. These records may also include genome assemblies.

Isolates:
512
Last updated:
2021-06-15

Genome collection

A subset of records within the isolate database may contain genomes assemblies. You can access these from the isolate database by filtering on sequence bin size in a query.

Genomes:
76
Last updated:
2021-06-15

Contact

Get in touch with us if you have any comments or suggestions concerning the website and the databases.

Cite us

Please cite Jolley et al. 2018 Wellcome Open Res 3:124 if you use data or analysis from PubMLST in your publications.

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Supported by

Wellcome Trust

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