Candida glabrata

Source of isolates submitted to the Candida glabrata database
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The MLST scheme hosted in this database was developed by Andrew Dodgson in the laboratories of David Denning (University of Manchester, UK) and David Soll (University of Iowa, USA). It is described in Dodgson et al. 2003. J Clin Microbiol 41:5709-17.

Database curated by obaderatgwdg.de (Oliver Bader) (Institute of Medical Microbiology, University Medical Center Göttingen, Göttingen, Germany). The contents of the database as of 2019 are briefly described in Gabaldón et al. 2020 Mycopathologia [online ahead of print], as are the correlations of MLST to MLP and whole-genome sequencing data for this species.

We have had to make some nomenclature changes to previously assigned STs. Please see the timeline of changes for full details.

The preferred citation for this website is:

Jolley et al. Wellcome Open Res 2018, 3:124 [version 1; referees: 2 approved].

Typing

The typing database contains nomenclature - allele definitions that provide an identifier for every unique allele sequence, and MLST profiles that index each unique combination of alleles with a sequence type (ST).

Allele sequences:
228
Last updated:
2020-11-17

Isolate collection

The isolate database consists of isolate records containing provenance and phenotype information linked to molecular typing information. These records may also include genome assemblies.

Isolates:
1,375
Last updated:
2020-12-23

Genome collection

A subset of records within the isolate database may contain genomes assemblies. You can access these from the isolate database by filtering on sequence bin size in a query.

Genomes:
1
Last updated:
2020-10-27