Pasteurella multocida

Source of isolates submitted to the Pasteurella multocida database

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These databases host two separate P. multocida MLST schemes.

The Multi-host MLST scheme covers isolates from various hosts, including cattle, sheep, pigs and birds. It was developed to investigate evolutionary relationships of isolates from different host species.
- Primers
The RIRDC MLST scheme was developed initially to investigate avian isolates (Subaaharan et al. 2010 Vet Microbiol 141:354-61).
- Primers

Both schemes are currently curated by p.blackalluq.edu.au (Pat Blackall) (Animal Research Institute, Australia). Please cite specific schemes and the website.

The preferred citation for this website is:

Jolley et al. Wellcome Open Res 2018, 3:124 [version 1; referees: 2 approved].

Typing

The typing database contains nomenclature - allele definitions that provide an identifier for every unique allele sequence, and MLST profiles that index each unique combination of alleles with a sequence type (ST).

Isolate collection

The isolate database consists of isolate records containing provenance and phenotype information linked to molecular typing information. These records may also include genome assemblies.

Genome collection

A subset of records within the isolate database may contain genomes assemblies. You can access these from the isolate database by filtering on sequence bin size in a query.