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Fish Pathogen Genome Database

This site uses two linked databases powered by the BIGSdb genomics platform. The sequence definition database contains allele sequence and MLST profile definitions whereas the isolate database contains provenance and epidemiological information. Further details about BIGSdb can be found in Jolley & Maiden 2010, BMC Bioinformatics 11:595.

This database has been set up for research on fish pathogens by the Sheppard Laboratory, University of Bath.

Database curated by Ben Pascoe.

Citing the database

The preferred format for citing this website in publications is:

This publication made use of the Fish pathogen database (https://pubmlst.org/fish/) sited at the University of Oxford (Jolley et al. Wellcome Open Res 2018, 3:124 [version 1; referees: 2 approved]). The development of this site has been funded by the Wellcome Trust.


Isolate database
Isolates: 203
Last updated: 2018-07-20