Arcobacter spp.

Source of isolates submitted to the Arcobacter spp. database

The MLST scheme hosted in this database was developed by William.Millerars.usda.gov (Bill Miller) and colleagues. It is described in Miller et al. 2009 BMC Microbiol 14:196.

Primers

Please note that these databases will no longer be curated after January 31 2019. If you are interested in taking on the role of curator, please contact keith.jolleybiology.ox.ac.uk (Keith Jolley). See a brief overview of the role of a curator for more details.

The preferred citation for this website is:

Jolley et al. Wellcome Open Res 2018, 3:124 [version 1; referees: 2 approved].

Typing

The typing database contains nomenclature - allele definitions that provide an identifier for every unique allele sequence, and MLST profiles that index each unique combination of alleles with a sequence type (ST).

Isolate collection

The isolate database consists of isolate records containing provenance and phenotype information linked to molecular typing information. These records may also include genome assemblies.

Genome collection

A subset of records within the isolate database may contain genomes assemblies. You can access these from the isolate database by filtering on sequence bin size in a query.

Genomes:

Last updated:

2021-02-25