A collection of open-access, curated databases that integrate population sequence data with provenance and phenotype information for over 100 different microbial species and genera.
@arlvvv You can BLAST against multiple genomes individually but not against all genomes on the site in a single query. See https://t.co/MazUftdEXU.
The 2018 paper describing PubMLST and the BIGSdb platform has just reached 1000 citations on Google Scholar. https://t.co/l4YTM37PGR @MaidenLab
RT @keithajolley If you use the Meningococcal Deduced Vaccine Antigen Reactivity (MenDeVAR) Index to test for Bexsero or Trumenba vaccine coverage of meningococcal isolates, note that this is now accessible via the PubMLST API, facilitating its use in analysis pipelines. https://t.co/Q52r0SnXCY.
We're aware of a network issue that is affecting external connectivity to PubMLST. IT support are investigating - no further information at this time. Apologies for any inconvenience.
RT @chcrestani A new webinar series organised by KlebNET-GSP on "Platforms & tools for K. pneumoniae genomic surveillance" is starting soon! @keithajolley and @FedexNapalm will kick-off presenting BIGSdb on October the 4th. To sign up: https://t.co/gKMaZwr8Re #KlebClub #KlebNET https://t.co/fMinrT2MK1
RT @ESGEM_ESCMID Main advantages of BIGSdb presented by @keithajolley: curated database of isolates and genomes, schemes for typing and also for biochemical pathways, vaccine compatibility/coverage (e.g., MenDeVAR)
Note that the suspension time is slightly earlier than previously announced due to operational requirements.
Reminder: https://t.co/leydcwWim4 will be unavailable September 5-7 as the data centre will be undergoing a full shutdown for electrical testing. Services will be suspended at 10.30am GMT Monday September 5 and should resume at approximately 12.00 noon GMT Wednesday September 7.