Plasmid MLST Databases

The Plasmid MLST website contains profiles and isolate databases for each incompatibility group. This structure offers advantages over a single database system. Further details can be found here.

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The use of this database is subject to the terms of the policy document and it should be acknowledged in all publications that make use of it. The preferred format for the acknowledgement can be found in the right-hand sidebar.

IncI1 and IncHI2 schemes: developed by Aurora García-Fernández and Alessandra Carattoli, Istituto Superiore di Sanità, Rome, Italy (funded by the European Commission and the Italian Ministry of Research and University). Curated by Alessandra Carattoli.

IncHI1 scheme: developed by Minh-Duy Phan and John Wain, The Wellcome Trust Sanger Institute, Hinxton, Cambridge, UK. Curated by Minh-Duy Phan.

Website and database managed by Keith Jolley. The primary plasmid MLST website is hosted at The Department of Zoology, University of Oxford, UK.

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A. baumannii
Arcobacter
B. cepacia
B. cereus
B. hyodysenteriae
B. intermedia
Bordetella
C. difficile
C. diphtheriae
C. fetus
C. jejuni
C. upsaliensis
Chlamydiales
Cronobacter
H. pylori
Neisseria
P. aeruginosa
P. multocida (RIRDC)
P. multocida (multi)
S. agalactiae
S. oralis
S. uberis
S. zooepidemicus
Sinorhizobium
V. parahaemolyticus
Wolbachia
X. fastidiosa
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Citing the database

The preferred format for citing this website in publications is:

This publication made use of the plasmid MLST website (http://pubmlst.org/ plasmid/) developed by Keith Jolley and sited at the University of Oxford (Jolley et al. 2004, BMC Bioinformatics, 5:86). The development of this site has been funded by the Wellcome Trust.

Status

Sequence database
Sequences: 51
Profiles:
IncI1 MLST: 50
IncHI2 DLST: 2

Isolate database
Isolates: 91
Last updated: 2010-05-07