Full information on isolate M11 241018 (id:21238)
Projects
Provenance/primary metadata
- id
- 21238
- isolate
- M11 241018
- strain designation
- B: P1.18-1,14: F1-5: ST-1194 (cc41/44)
- aliases
- ERR294442; SC_RUN_9472_6#63
- country
- UK [Wales]
- continent
- Europe
- year
- 2011
- epidemiological year
- 07/2011-06/2012
- disease
- invasive (unspecified/other)
- species
- Neisseria meningitidis
- serogroup
- B
- genogroup
- B
- capsule group
- B
- type strain
- 0
Tracking
- bioproject accession
- PRJEB2712 www.ebi.ac.uk
- biosample accession
- SAMEA1904472; ERS209166 www.ebi.ac.uk
- run accession
- ERR294442 www.ebi.ac.uk
- sender
- Dorothea Hill, University of Oxford, UK
- curator
- Odile Harrison, University of Oxford, UK (E-mail: odile.harrison@ndph.ox.ac.uk)
- update history
- 252 updates show details
- date entered
- 2013-04-12
- datestamp
- 2024-04-26
Secondary metadata
Deduced vaccine reactivity
- Bexsero reactivity
- exact match notes
- Bexsero notes
- NHBA_peptide: 2 is exact match to vaccine variant - peptide sequence match (PMID:27521232)
- Trumenba reactivity
- cross-reactive notes
- Trumenba notes
- fHbp_peptide: 4 is cross-reactive to vaccine variant - data derived from MEASURE assays (PMID:29535195), and SBA assays (PMID:27846061, PMID:29236639)
Publications (9)
Sequence bin
- contigs
- 198
- total length
- 2,172,730 bp
- max length
- 119,192 bp
- mean length
- 10,974 bp
- N50
- 46,348
- L50
- 14
- N90
- 8,895
- L90
- 53
- N95
- 3,699
- L95
- 71
- %GC
- 51.51
- Ns
- 0
- gaps
- 0
- loci tagged
- 2,220
Annotation quality metrics
Provenance information
Missing field values for: age_range, source
Scheme completion
Scheme | Scheme loci | Designated loci | Annotation | |
---|---|---|---|---|
Score | Status | |||
rplF species | 1 | 1 | 100 | |
Finetyping antigens | 3 | 3 | 100 | |
Bexsero Antigen Sequence Typing (BAST) | 5 | 5 | 100 | |
MLST | 7 | 7 | 100 | |
Ribosomal MLST | 53 | 53 | 100 | |
N. meningitidis cgMLST v3 | 1329 | 1327 | 99 | |
N. meningitidis cgMLST v2 | 1422 | 1419 | 99 |
Similar isolates (determined by classification schemes)
Some groups only contain this isolate. Show single groups
Experimental schemes are subject to change and are not a stable part of the nomenclature.
Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
---|---|---|---|---|---|
Bact_rmlstc_5 | Ribosomal MLST | Single-linkage | 5 | experimental | 698 (4985 isolates) |
Bact_rmlstc_4 | Ribosomal MLST | Single-linkage | 4 | experimental | 838 (579 isolates) |
Bact_rmlstc_3 | Ribosomal MLST | Single-linkage | 3 | experimental | 968 (563 isolates) |
Bact_rmlstc_2 | Ribosomal MLST | Single-linkage | 2 | experimental | 1180 (553 isolates) |
Bact_rmlstc_1 | Ribosomal MLST | Single-linkage | 1 | experimental | 1673 (497 isolates) |
Nm_cgc3_200 | N. meningitidis cgMLST v3 | Single-linkage | 200 | experimental | 38 (2533 isolates) |
Nm_cgc3_100 | N. meningitidis cgMLST v3 | Single-linkage | 100 | experimental | 428 (338 isolates) |
Nm_cgc3_50 | N. meningitidis cgMLST v3 | Single-linkage | 50 | experimental | 845 (5 isolates) |
Nm_cgc3_25 | N. meningitidis cgMLST v3 | Single-linkage | 25 | experimental | 1281 (2 isolates) |
Bact_rmlstc_5 | Ribosomal MLST | Single-linkage | 5 | experimental | 698 (4985 isolates) |
Bact_rmlstc_4 | Ribosomal MLST | Single-linkage | 4 | experimental | 838 (579 isolates) |
Bact_rmlstc_3 | Ribosomal MLST | Single-linkage | 3 | experimental | 968 (563 isolates) |
Bact_rmlstc_2 | Ribosomal MLST | Single-linkage | 2 | experimental | 1180 (553 isolates) |
Bact_rmlstc_1 | Ribosomal MLST | Single-linkage | 1 | experimental | 1673 (497 isolates) |
Nm_cgc3_200 | N. meningitidis cgMLST v3 | Single-linkage | 200 | experimental | 38 (2533 isolates) |
Nm_cgc3_100 | N. meningitidis cgMLST v3 | Single-linkage | 100 | experimental | 428 (338 isolates) |
Nm_cgc3_50 | N. meningitidis cgMLST v3 | Single-linkage | 50 | experimental | 845 (5 isolates) |
Nm_cgc3_25 | N. meningitidis cgMLST v3 | Single-linkage | 25 | experimental | 1281 (2 isolates) |
Nm_cgc3_10 | N. meningitidis cgMLST v3 | Single-linkage | 10 | experimental | 1373 (1 isolate) |
Schemes and loci
- All loci
- Capsule
- Genetic Information Processing
- Genomic islands
- Lineage Schemes
- Metabolism
- Peptidoglycan Biosynthesis
- Pilin
- Typing
- Other schemes
- Loci not in schemes
Navigate and select schemes within tree to display allele designations
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