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PubMLST
Public databases for molecular typing
and microbial genome diversity

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Sandbox

Source of isolates submitted to the Sandbox database

This is a sandbox set of databases to allow for testing and ad hoc analyses. Isolate data added here will be automatically removed after six months.

Please contact keith.jolleyatzoo.ox.ac.uk (Keith Jolley) if you would like access.

Typing

The typing database contains nomenclature - allele definitions that provide an identifier for every unique allele sequence, and MLST profiles that index each unique combination of alleles with a sequence type (ST).

Allele sequences: 0

Isolate collection

The isolate database consists of isolate records containing provenance and phenotype information linked to molecular typing information. These records may also include genome assemblies.

Isolates: 0

Contact

Get in touch with us if you have any comments or suggestions concerning the website and the databases.

Cite us

Please cite Jolley et al. 2018 Wellcome Open Res 3:124 if you use data or analysis from PubMLST in your publications.

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Wellcome Trust

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