Campylobacter jejuni/coli

Source of isolates submitted to the Campylobacter jejuni/coli database

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The MLST scheme hosted in this database is described in Dingle et al. 2001 J Clin Microbiol 39:14-23. The cgMLST scheme is described in Cody et al. 2017 J Clin Microbiol 55:2086-2097.

Database curated by frances.collesbiology.ox.ac.uk (Frances Colles).

Primers and conditions
- MLST
- MOMP
Campylobacteriosis sentinel surveillance in Oxfordshire, UK

The preferred citation for this website is:

Jolley et al. Wellcome Open Res 2018, 3:124 [version 1; referees: 2 approved].

Typing

The typing database contains nomenclature - allele definitions that provide an identifier for every unique allele sequence, and MLST profiles that index each unique combination of alleles with a sequence type (ST).

Isolate collection

The isolate database consists of isolate records containing provenance and phenotype information linked to molecular typing information. These records may also include genome assemblies.

Genome collection

A subset of records within the isolate database may contain genomes assemblies. You can access these from the isolate database by filtering on sequence bin size in a query.