Bordetella MLST Database

This MLST site uses two linked databases powered by the BIGSdb genomics platform. The sequence definition database contains allele sequence and MLST profile definitions whereas the isolate database contains provenance and epidemiological information. Further details about BIGSdb can be found in Jolley & Maiden 2010, BMC Bioinformatics 11:595.

Information
- Primers used for amplification and sequencing
Access databases
- MLST
  - Sequence and profile definitions
  - Isolates
- Genomics (rMLST database: register for access)
  - Sequence definitions
  - Genomes
Submission of data
Policy document

BIGSdb software

MLST described in Diavatopoulos et al 2005, PLoS Pathog. 2005 1:e45.

This MLST scheme was developed by Dimitri Diavatopoulos and Frits Mooi at the National Institute for Public Health and Environment (RIVM), Bilthoven, Netherlands.

MLST database curated by Karen Register and Han van der Heide.

Citing the database

The preferred format for citing this website in publications is:

This publication made use of the Bordetella Multi Locus Sequence Typing website (http://pubmlst.org/ bordetella/) developed by Keith Jolley and sited at the University of Oxford (Jolley & Maiden 2010, BMC Bioinformatics, 11:595). The development of this site has been funded by the Wellcome Trust.

Status

Sequence database
Sequences: 63
Profiles (MLST): 61
Last updated: 2013-05-22

Isolate database
Isolates: 149
Last updated: 2013-04-05