Saprolegnia parasitica MLST Databases

This site uses two linked databases powered by the BIGSdb genomics platform. The sequence definition database contains allele sequence and MLST profile definitions whereas the isolate database contains provenance and epidemiological information. Further details about BIGSdb can be found in Jolley & Maiden 2010, BMC Bioinformatics 11:595.

Information
- Primers used for amplification and sequencing
Databases
- Sequence/profile definitions database
- Isolates database
Policy document
Submission of data

This MLST scheme was developed by Damiana Ravasi and colleagues at the University of Applied Sciences of Southern Switzerland. It is described in Ravasi et al. 2018 J. Fish Dis [Epub ahead of print] DOI: 10.1111/jfd.12869.

Database curated by Damiana Ravasi.

Citing the database

The preferred format for citing this website in publications is:

This publication made use of the Saprolegnia parasitica MLST website (https://pubmlst.org/ sparasitica/) sited at the University of Oxford (Jolley & Maiden 2010, BMC Bioinformatics, 11:595). The development of this site has been funded by the Wellcome Trust.

Status

Sequence database
Sequences: 78
Profiles (MLST): 15
Last updated: 2018-03-26

Isolate database
Isolates: 82
Last updated: 2018-03-26