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Saprolegnia parasitica MLST Databases

This site uses two linked databases powered by the BIGSdb genomics platform. The sequence definition database contains allele sequence and MLST profile definitions whereas the isolate database contains provenance and epidemiological information. Further details about BIGSdb can be found in Jolley & Maiden 2010, BMC Bioinformatics 11:595.

This MLST scheme was developed by Damiana Ravasi and colleagues at the University of Applied Sciences of Southern Switzerland. It is described in Ravasi et al. 2018 J. Fish Dis [Epub ahead of print] DOI: 10.1111/jfd.12869.

Database curated by Damiana Ravasi.

Citing the database

The preferred format for citing this website in publications is:

This publication made use of the Saprolegnia parasitica MLST website (https://pubmlst.org/ sparasitica/) sited at the University of Oxford (Jolley et al. Wellcome Open Res 2018, 3:124 [version 1; referees: 2 approved]). The development of this site has been funded by the Wellcome Trust.


Sequence database
Sequences: 78
Profiles (MLST): 15
Last updated: 2018-03-26

Isolate database
Isolates: 82
Last updated: 2018-03-26