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Neisseria porB variable loop sequences

These legacy sequences are no longer being updated. They are listed here as they may be referred to in publications.

PorB Home

Variable loopsPeptide sequenceClass
I.1VEVSRVKDAGTYKAQGGKSKTATQI2
I.2VEVSRVKNQGVKTKTATQI2
I.3VETSRSVAHNGAQAASVETGTGI3
I.4VETSRSVEHNGGQVVSVETGTGI3
I.5VETSRSVEHKGGQVVSVETGTGI3
I.6VETSRSLDYQDGQVYSVETGTGI3
I.7VETSRSVFHQNGQVTEVTTATGI3
I.8VETSRSVFHQNGQVTEVATATGI3
I.9VETSRSVYYEDGKAAEVTTGTGI3
I.10VETSRSVAHNGAQAATVETGTGI3
I.11VETSRSLNYQDGQVYSVETGTGI3
I.12VETSRSVFHQNGQVTEVTTGTGI3
I.13VETSRSVEHNRGQVVSVETGTGI3
I.14EVSRVKDKGGNSKTATQI2
I.15EVSRVKDAGTYKAQGGKSKTATQI2
I.16VETSRSVKHNGGQVVSVETGTGI3
I.17VETSRSVYYEDGKAAEVTTDTGI3
I.18EVSRVKNQGVKTKTATQI2
I.19EVSRVKDADTYKAQGGKSKTATQI2
I.20EVSRVKTKTATQI2
I.21VETSRSVYYKDGKAAEVTTGTGI3
I.22EVSRVKNQGVKNQGVKNQGVKNQGVKNQGVKNQGVKTKTATQI2
I.23EVSRVKDANAYKAQGGKSKTATQI2
I.24LNDNAGRHNS3
I.25VETSRSVTHNGAQAASVETGTGI3
I.26VETSRSVYYEDGKAAKVTTGTGI3
IV.1PRDNANDVDKYKHTKSSR2
IV.2PRDNANDVDKYKHMKSSR2
IV.3PRDNANDKDKYTHKQSSR2
IV.4PRDNANDKDKYEHHKSSR2
IV.5LNDNAGKYNS3
IV.6LNDNVGRHNS3
IV.7LNDNAGRHNS3
IV.8PRDNANDVDKYKHMKPSR2
IV.9PRDNANDLDKYTHKQSSR2
IV.10PRDNANDADRYKHTKSSR2
IV.11PRDNANDKDKYTHHDSSR2
IV.12LNDNAGKHNS3
IV.13PRDNANDKDKYTHMKSSR2
IV.15PRDNANDKDKYQHTKSSR2
V.1KYADLNTDAERVAVNTANAHPVKDY2
V.2KYADLKDNAERVAVNTANAHPVKDY2
V.3KYADLNKDAERVAAGTSGAYAVKDY2
V.4KYADLNNDAERVAVNTPNAHAVKDY2
V.5KYADLNTDAERVAVGATDANPVKDY2
V.6RHHQVQENVNIEKY3
V.7RHVRVDENVNIEKY3
V.8RHHQVQEDLNIEKY3
V.9RHHRVQEDINIEKY3
V.10RHHQVQEGLNIEKY3
V.11RHQDVDDVKIEKY3
V.12RHQNVDNVKIEKY3
V.13RHEQIDNVKIEKY3
V.14RHQNVDVKIEKY3
V.15RHERVDKNVNIEKY3
V.16RHHQVVQEDLNIEKY3
V.17RHQDVDGVKIEKY3
V.18KYADSDAYAKPVAVGTANALPVKDY2
V.19KYADLKDNAERVAVNTAGAHAVKDY2
V.20RHQDVDNVKIEKY3
V.21KYADSDAYAKRVAPGTGLAVKDY2
V.22RHEQIGNVKIEKY3
V.23KYADLKDNAERVAVGTTGAHPVKDY2
V.24RHEKIDNVKIEKY3
V.25KYADLNTDAERVAERVAVNTANAHPVKDY2
V.26RHQDVGNVKIEKY3
V.27KYADLNDDAERVAVGTANSNPVKDY2
V.28KYADLNTDGKRVAVDNTDANAVKDY2
V.29KYADLNNDAERVAAGTSGAHAVKDYQ2
V.30KYADLNTDAERVAVGTTGAHPVKDY2
V.31RHQDVNDVKIEKY3
V.32RHQDVDDKY3
VI.1AAKNNEVGSTKGKKHEQTQ2
VI.2AAKNNTGTVGKQGKKHEQTQ2
VI.3AAKQGKKHEQTQ2
VI.4AAKNNEVGNLNIGKKHEQTQ2
VI.5AAKNNTVSVGEQGKKHEQTQ2
VI.6DAKLALPNDNSHNSQTE3
VI.7DAKLVEENYSHNSQTE3
VI.8DAKLTEENYSHNSQTE3
VI.9DAKLVEDNYSHNSQTE3
VI.10DAKLVEDNSHNSQTE3
VI.11DAKLVKDNSHNSQTE3
VI.12DAKLTDASNSHNSQTE3
VI.13DAKLALPNNNSHNSQTE3
VI.14AAKNNTGSVGEQGKKHEQTQ2
VI.15DAKLVADNSHNSQTE3
VI.16AAKNNKVGSTDVGKKYDQTQ2
VI.17AAKNNEVGSTDVGKKHEQTQ2
VI.18AAKNNDANPATNGKKLEQTQ2
VI.19AAKNNKVGSTKGKKHEQTQ2
VI.20AAKNNDTSPATNKKHEQTQ2
VI.21AAKNNDTNPATNGKKLEQTQ2
VI.22DAKLVADNYSHNSQTE3
VI.23DAKLVEKNYSHNSQTE3
VI.24DAKLVKDNYSHNSQTE3
VI.25DAKLVEGNSHNSQTE3
VI.26AKNNEVGSTAIGKKHEQTQ2
VI.27AAKNNDTKPATNGKKLEQTQ2
VI.28AAKNNDGSANNGKKHEQTQ2
VI.29AAKNNTGTAEQGKKHEQTQ2
VI.30AAKNNDSDIGKKDEQTQ2
VI.31DAKLVEDNYSHNSTTE3
VI.32DEKLVKDNSHNSQTE3
VII.1KVNGVKDANYQYDQ2
VII.2KVNGEKVARYQYDQ2
VII.3KVNGEKAARYQYDQ2
VII.4KVNGKKAARYQYDQ2
VII.5SFDDADLSNDYDQ3
VII.6SFDATNYNNDYDQ3
VII.7SVDDAKRDNTYDQ3
VII.8LVDSADYTNDYDQ3
VII.9SFDDADYTNDYDQ3
VII.10LVDNADIGNEYDQ3
VII.11LVDDADIGNEYDQ3
VII.12SFDDADRYNTYDQ3
VII.13LVDSADLSNDYDQ3
VII.14SFDNADIGNEYDQ3
VII.15SFDGADLSNDYDQ3
VII.16KVNGEKVASYQYDQ2
VII.17KIKGKKDADTQYDQ2
VII.18KINGKKDADTRYDQ2
VII.19KVNGVKKASYQYDQ2
VII.20SFDDAALSNDYDQ3
VII.21KENGVKDANQYDQ2
VII.22SFDDADYPNDYDQ3
VII.23LFDDADRYNTYDQ3
VII.24SFDAADYNNDYDQ3
VII.25LVNDADIGNEYDQ3
VII.26LVDDANIGNEYDQ3
VII.27VNGVKDANYQYDQ2
VII.28LVDDADVGNEYDQ3
VII.29FDDDADYTNDYDQ3
VII.30KVNGMKAKVNGMKDANYQYDQ2
VII.31KVNGVKEARYQYDQ2
VII.32LFDDADLSNDYDQ3
VII.33SFDDAADYTNDYDQ3
VII.34SFNDADLSNDYDQ3
VII.35LVDDADMGNEYDQ3
VII.36SFDDANLSNDYDQ3
VIII.1KQGKGAGKVEQT2
VIII.2KEGKGVNKTEKT2
VIII.3QEGKGKNKTEKT2
VIII.4QEGKGKNKFVST3
VIII.5QEGKGENKFVST3
VIII.6QEGKGENKFVAT3
VIII.7QEGEGESKFVST3
VIII.8QEGKGESKFVST3
VIII.9QESKGENKFVST3
VIII.10QEGKSENKFVAT3
VIII.11KQGKGARKVEQT2
VIII.12QDGKGENKFVAT3
VIII.13KEGKGDTKKTST2
VIII.14KQGKGAGRKVEQT2
VIII.15QKGKGENKFVST3
VIII.16KEDKGVNKTEKT2
VIII.17QESKGESKFVST3
VIII.18QGGKGESKFVST3

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Citing the database

The preferred format for citing this website in publications is:

This publication made use of the Neisseria Multi Locus Sequence Typing website (https://pubmlst.org/ neisseria/) sited at the University of Oxford (Jolley et al. Wellcome Open Res 2018, 3:124 [version 1; referees: 2 approved]). The development of this site has been funded by the Wellcome Trust and European Union.