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Submission of data

All users are welcome to submit their new allele sequences to our database for Mycobacteria.  This information will be made available on this web site.

In order to maintain the quality of the data, the databases are curated and all submissions will be checked before entry.

Automated submission system

We have introduced an automated system for submission of new alleles, profiles and isolate data.

Please read the submission system documentation for further details.

Template files

The template files listed below will help you upload your data in the correct format.

Database Template Version Field description
PubMLST isolate database Download 2020-01-07Fields

(in some browsers you may have to right-click and select 'Save Target As' or 'Save Link As').

Citing the database

The preferred format for citing this website in publications is:

This publication made use of the PubMLST Mycobacteria genome database (https://pubmlst.org/ mycobacteria/) sited at the University of Oxford (Jolley et al. Wellcome Open Res 2018, 3:124 [version 1; referees: 2 approved]). The development of this site has been funded by the Wellcome Trust.

Status

Sequence database
Sequences: 292,362
Profiles:
Core genome (H37Rv ref vs 19 finished species): 5626
MLST: 873
Last updated: 2019-11-15

Isolate database
Isolates: 17,032
Last updated: 2020-01-10