Expand PubMLST Databases Downloads BIGSdb Contact Site map

Submission of data

All users are welcome to submit their new allele sequences to our database for Enterococcus faecium.  This information will be made available on this web site.

In order to maintain the quality of the data, the databases are curated and all submissions will be checked before entry. Therefore, please send your data to the curator of the database:

Curator: Janetta Top

Automated submission system

We have introduced an automated system for submission of new alleles, profiles and isolate data.

Users will need an account in order to use the submission system. Please register if you do not already have an account.

Please read the submission system documentation for further details.

Template files

The template files listed below will help you upload your data in the correct format.

Database Template Version Field description
Isolates database Download 2014-12-11 Fields

(in some browsers you may have to right-click and select 'Save Target As' or 'Save Link As').

Citing the database

The preferred format for citing this website in publications is:

This publication made use of the Enterococcus faecium MLST website (https://pubmlst.org/ efaecium/) sited at the University of Oxford (Jolley & Maiden 2010, BMC Bioinformatics, 11:595). The development of this site has been funded by the Wellcome Trust.

Status

Sequence database
Sequences: 602
Profiles (MLST): 1302
Last updated: 2017-04-25

Isolate database
Isolates: 3085
Last updated: 2017-04-25