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Submission of data

All users are welcome to submit their strain information and new allele sequences to our databases for Campylobacter species.  This information will be made available on this web site.  In order that queries and requests for strains can be addressed to the submitter of isolate data, the name and affiliation of the submitter will be displayed on the website.  E-mail addresses are not displayed but can be requested from the curator.  Please contact the curator or database manager if you do not wish your details to be displayed.  

In order to maintain the quality of the data, the databases are curated and all submissions will be checked before entry.

Automated submission system

We have introduced an automated system for submission of new alleles and isolate data.

Users will need an account in order to use the submission system. Please register if you do not already have an account.

Please read the submission system documentation for further details.

Template files

The template files listed below will help you upload your data in the correct format.

Database Template Version Field description
PubMLST C. jejuni/coli isolate database Download 2016-02-01 Fields
PubMLST Non-C. jejuni/coli isolate database Download 2015-06-26 Fields

(in some browsers you may have to right-click and select 'Save Target As' or 'Save Link As').

Citing the database

The preferred format for citing this website in publications is:

This publication made use of the Campylobacter Multi Locus Sequence Typing website (https://pubmlst.org/ campylobacter/) sited at the University of Oxford (Jolley & Maiden 2010, BMC Bioinformatics, 11:595). The development of this site has been funded by the Wellcome Trust.

Status

jejuni/coli

Sequence database
Sequences: 818563
Profiles:
MLST: 8966
C. jejuni / C. coli cgMLST v1.0: 16221

Isolate database
Isolates: 53869
Last updated: 2017-08-18

Non-jejuni/coli

Sequence database
Sequences: 2943
Profiles:
C. concisus/curvus MLST: 130
C. fetus MLST: 69
C. helveticus MLST: 9
C. hyointestinalis MLST: 131
C. insulaenigrae MLST: 43
C. lanienae MLST: 171
C. lari MLST: 137
C. sputorum MLST: 16
C. upsaliensis MLST: 203

Isolate database
Isolates: 511
Last updated: 2017-08-11