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Submission of data

All users are welcome to submit their new allele sequences to our database for Candida albicans.  This information will be made available on this web site.

In order to maintain the quality of the data, the databases are curated and all submissions will be checked before entry. Therefore, please send your data to the curator of the database:

Curators: Marie-Elisabeth Bougnoux and Frank Odds

Format for submissions

Please E-mail the curator with the strain information or allelic profile as an attachment in Excel format using the appropriate template, which is downloadable below.  Please follow the instructions contained within the templates when submitting data.  Submissions of new allelic profiles require a submission of a corresponding isolate for the PubMLST database.

Database Template Version Field description
Isolates database Download 2014-12-08 Fields

(in some browsers you may have to right-click and select 'Save Target As' or 'Save Link As').

Submission of new alleles

Please send an email to the curator with the forward and reverse trace files attached.

Citing the database

The preferred format for citing this website in publications is:

This publication made use of the Candida albicans MLST website (https://pubmlst.org/ calbicans/) sited at the University of Oxford (Jolley & Maiden 2010, BMC Bioinformatics, 11:595). The development of this site has been funded by the Wellcome Trust.

Status

Sequence database
Sequences: 1449
Profiles (MLST): 3431
Last updated: 2017-10-16

Isolate database
Isolates: 4318
Last updated: 2017-03-16