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iTOL - Interactive Tree of Life - Helicobacter PubMLST

This plugin uploads data for analysis within the Interactive Tree of Life online service:

Interactive tree of life (iTOL): an online tool for the display and annotation of phylogenetic and other trees

iTOL is developed by:

  • Ivica Letunic (1)
  • Peer Bork (2,3,4)
  1. Biobyte solutions GmbH, Bothestr 142, 69126 Heidelberg, Germany
  2. European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany
  3. Max Delbrück Centre for Molecular Medicine, 13125 Berlin, Germany
  4. Department of Bioinformatics, Biocenter, University of Würzburg, 97074 Würzburg, Germany

Web site: https://itol.embl.de/
Publication: Letunic & Bork (2016) Interactive tree of life (iTOL) v3: an online tool for the display
and annotation of phylogenetic and other trees. Nucleic Acids Res 44(W1):W242-5.

This tool will generate neighbor-joining trees from concatenated nucleotide sequences. Only DNA loci that have a corresponding database containing allele sequence identifiers, or DNA and peptide loci with genome sequences, can be included. Please check the loci that you would like to include. Alternatively select one or more schemes to include all loci that are members of the scheme.

Analysis is limited to 2,000 records or 100,000 sequences (records x loci).

Isolates
User genomes

Optionally include data not in the
database.

Upload assembly FASTA file
(or zip file containing multiple
FASTA files - one per genome):

Loci
Schemes
iTOL datasets

Select to create data overlays
(Use Ctrl to select multiple)

iTOL data type

Include in identifier
Action