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Description of database fields

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field namecommentsdata typeallowed valuesrequired
idprimary keyint - yes
isolateisolate nametext - yes
countryCountry where strain was isolatedtext - yes
regionRegion/city etc inside countrytext - no
yearyear of isolationint - no
epidemiological_yearepidemiological year for study in format mm/yyyy-mm/yyyytext - no
age_yrage in yearsint - no
age_mthmonth part of age (1-12) for patients under 1 year oldint - no
sexsex of patient/carriertext male
female
no
diseaseplease put other diseases in comments fieldtext carrier
meningitis
septicaemia
meningitis and septicaemia
uncomplicated gonorrhoea
disseminated gonococcal infection
invasive (unspecified/other)
other
no
sourcebiological source of sampletext blood
CSF
throat swab
urethral swab
joint fluid
sputum
other
no
epidemiologytext carrier
healthy contact
sporadic case
endemic
epidemic
pandemic
no
speciesSpecies name in multiple species databases where permittedtext Neisseria meningitidis
Neisseria lactamica
Neisseria gonorrhoeae
Neisseria cinerea
Neisseria mucosa
Neisseria flava
Neisseria flavescens
Neisseria perflava
Neisseria polysaccharea
Neisseria sicca
Neisseria subflava
Neisseria elongata
Neisseria dentrificans
Neisseria sp.
yes
serogroupif you select 'other' please provide further details in the comments fieldtext A
B
C
E
W
X
Y
Z
H
J
K
L
NG
other
no
MLEE_designationtext A4 Cluster
ET-37 Complex
ET-5 Complex
Lineage 3
Lineage IV
Subgroup I
Subgroup II
Subgroup III
Subgroup IV-I
Subgroup IV-II
Subgroup V
Subgroup VI
Subgroup VII
Subgroup VIII
Subgroup IX
Subgroup X
other
no
serotypetext - no
sero_subtypetext - no
ET_notext - no
penicillinMIC in mg/ltext - no
penicillin_rangeMIC value rangetext <=0.06 (susceptible)
>0.06 - 1 (intermediate)
>1 (resistant)
no
amoxicillinMIC in mg/ltext - no
sulphonamideMIC in mg/ltext - no
ceftriaxoneMIC in mg/ltext - no
ceftriaxone_rangeMIC value rangetext <=0.06 (susceptible)
>0.06 (not susceptible)
no
chloramphenicolMIC in mg/ltext - no
chloramphenicol_rangeMIC value rangetext <=2 (susceptible)
>2 - <8 (intermediate)
>=8 (resistant)
no
cefotaximeMIC in mg/ltext - no
cefotaxime_rangeMIC value rangetext <=0.06 (susceptible)
>0.06 (not susceptible)
no
rifampicinMIC in mg/ltext - no
rifampicin_rangeMIC value rangetext <=1 (susceptible)
>1 (resistant)
no
ciprofloxacinMIC in mg/ltext - no
ciprofloxacin_rangeMIC value rangetext <=0.03 (susceptible)
>0.03 - <0.12 (intermediate)
>=0.12 (resistant)
no
ENA_accessionENA SRA accession number to access short read datatext - no
commentsany other commentstext - no
sendersender unique name, link to usersint Click for list of sender ids yes
curatorcurator who entered data,link to usersint Click for list of curator ids yes
date_entereddate first entereddate - yes
datestampdate last modifieddate - yes