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Full information on isolate Kor 136 (id:6630)

Provenance/meta data

id
6630
isolate
Kor 136
country
South Korea
continent
Asia
region
Seoul
year
1998
serotype
23F
host
human
comments
Sputum
ENA accession
ERR016661 www.ebi.ac.uk
rMLST database accession
33745
sender
Kwan Soo Ko, Dept of Molecular cell Biology, Sungkyunkwan University, Suwon, Korea
curator
Melissa Jansen van Rensburg, University of Oxford, UK (E-mail: Melissa.JansenvanRensburg@ndph.ox.ac.uk)
update history
25 updates show details
date entered
2008-07-21
datestamp
2020-04-02

Publications (4)

  • Bogaardt C, van Tonder AJ, Brueggemann AB (2015). Genomic analyses of pneumococci reveal a wide diversity of bacteriocins - including pneumocyclicin, a novel circular bacteriocin. BMC Genomics 16:554
  • Brueggemann AB, Harrold CL, Rezaei Javan R, van Tonder AJ, McDonnell AJ, Edwards BA (2017). Pneumococcal prophages are diverse, but not without structure or history. Sci Rep 7:42976
  • Croucher NJ, Harris SR, Fraser C, Quail MA, Burton J, van der Linden M, McGee L, von Gottberg A, Song JH, Ko KS, Pichon B, Baker S, Parry CM, Lambertsen LM, Shahinas D, Pillai DR, Mitchell TJ, Dougan G, Tomasz A, Klugman KP, Parkhill J, Hanage WP, Bentley SD (2011). Rapid pneumococcal evolution in response to clinical interventions. Science 331:430-4
  • Rezaei Javan R, van Tonder AJ, King JP, Harrold CL, Brueggemann AB (2018). Genome Sequencing Reveals a Large and Diverse Repertoire of Antimicrobial Peptides. Front Microbiol 9:2012

Sequence bin

contigs
278
total length
2,061,684 bp
max length
68,630 bp
mean length
7,417 bp
N50 contig number
26
N50 length (L50)
24,548
N90 contig number
89
N90 length (L90)
5,037
N95 contig number
118
N95 length (L95)
2,601
loci tagged
1,387
detailed breakdown
Display

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Sp_cgc_1000cgMLSTSingle-linkage1000experimentalgroup: 7 (4508 isolates)
Sp_cgc_500cgMLSTSingle-linkage500experimentalgroup: 2 (87 isolates)
Sp_cgc_400cgMLSTSingle-linkage400experimentalgroup: 2 (87 isolates)
Sp_cgc_300cgMLSTSingle-linkage300experimentalgroup: 2 (86 isolates)
Sp_cgc_200cgMLSTSingle-linkage200experimentalgroup: 2 (85 isolates)
Sp_cgc_100cgMLSTSingle-linkage100experimentalgroup: 2 (78 isolates)
Sp_cgc_50cgMLSTSingle-linkage50experimentalgroup: 2 (65 isolates)
Sp_cgc_25cgMLSTSingle-linkage25experimentalgroup: 11 (7 isolates)

Schemes and loci

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