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Full information on isolate 33D/2 (id:4665)

Provenance/meta data

id
4665
isolate
33D/2
alias
CSF/79
country
India
continent
Asia
year
1979
serotype
33D
host
human
penicillin
0.023
cefotaxime
0.016
sender
H Konradsen, Statens Serum Institute, Denmark
curator
Melissa Jansen van Rensburg, University of Oxford, UK (E-mail: Melissa.JansenvanRensburg@ndph.ox.ac.uk)
update history
19 updates show details
date entered
2007-07-31
datestamp
2020-03-24

Publications (2)

  • Brueggemann AB, Harrold CL, Rezaei Javan R, van Tonder AJ, McDonnell AJ, Edwards BA (2017). Pneumococcal prophages are diverse, but not without structure or history. Sci Rep 7:42976
  • Rezaei Javan R, van Tonder AJ, King JP, Harrold CL, Brueggemann AB (2018). Genome Sequencing Reveals a Large and Diverse Repertoire of Antimicrobial Peptides. Front Microbiol 9:2012

Sequence bin

contigs
53
total length
2,186,858 bp
max length
179,220 bp
mean length
41,262 bp
N50 contig number
8
N50 length (L50)
121,471
N90 contig number
22
N90 length (L90)
35,238
N95 contig number
26
N95 length (L95)
23,142
loci tagged
1,394
detailed breakdown
Display

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Sp_cgc_1000cgMLSTSingle-linkage1000experimentalgroup: 5 (4 isolates)
Sp_cgc_500cgMLSTSingle-linkage500experimentalgroup: 8 (2 isolates)
Sp_cgc_400cgMLSTSingle-linkage400experimentalgroup: 8 (2 isolates)
Sp_cgc_300cgMLSTSingle-linkage300experimentalgroup: 8 (2 isolates)
Sp_cgc_200cgMLSTSingle-linkage200experimentalgroup: 9 (2 isolates)
Sp_cgc_100cgMLSTSingle-linkage100experimentalgroup: 9 (2 isolates)
Sp_cgc_50cgMLSTSingle-linkage50experimentalgroup: 9 (2 isolates)
Sp_cgc_25cgMLSTSingle-linkage25experimentalgroup: 9 (2 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

Analysis: