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Full information on isolate 5185-06 (id:4001)

Provenance/meta data

id
4001
isolate
5185-06
country
USA
continent
North America
region
Maryland
serotype
19A
host
human
source
blood
penicillin
8
erythromycin
32
tetracycline
8
chloramphenicol
4
cefotaxime
2
sender
Bernard Beall, CDC Streptococcal Genetics Lab
curator
Melissa Jansen van Rensburg, University of Oxford, UK (E-mail: Melissa.JansenvanRensburg@ndph.ox.ac.uk)
update history
63 updates show details
date entered
2006-11-16
datestamp
2020-03-31

Publications (3)

  • Bogaardt C, van Tonder AJ, Brueggemann AB (2015). Genomic analyses of pneumococci reveal a wide diversity of bacteriocins - including pneumocyclicin, a novel circular bacteriocin. BMC Genomics 16:554
  • Brueggemann AB, Harrold CL, Rezaei Javan R, van Tonder AJ, McDonnell AJ, Edwards BA (2017). Pneumococcal prophages are diverse, but not without structure or history. Sci Rep 7:42976
  • Rezaei Javan R, van Tonder AJ, King JP, Harrold CL, Brueggemann AB (2018). Genome Sequencing Reveals a Large and Diverse Repertoire of Antimicrobial Peptides. Front Microbiol 9:2012

Sequence bin

contigs
15
total length
2,108,738 bp
max length
583,604 bp
mean length
140,583 bp
N50 contig number
3
N50 length (L50)
308,389
N90 contig number
7
N90 length (L90)
67,308
N95 contig number
9
N95 length (L95)
45,157
loci tagged
1,381
detailed breakdown
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