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Full information on isolate 6963-05 (id:4000)

Provenance/meta data

id
4000
isolate
6963-05
country
USA
continent
North America
region
Minnesota
serotype
19A
age yr
63
host
human
source
blood
penicillin
2
sender
Bernard Beall, CDC Streptococcal Genetics Lab
curator
Melissa Jansen van Rensburg, University of Oxford, UK (E-mail: Melissa.JansenvanRensburg@ndph.ox.ac.uk)
update history
33 updates show details
date entered
2006-11-16
datestamp
2020-04-01

Publications (3)

  • Bogaardt C, van Tonder AJ, Brueggemann AB (2015). Genomic analyses of pneumococci reveal a wide diversity of bacteriocins - including pneumocyclicin, a novel circular bacteriocin. BMC Genomics 16:554
  • Brueggemann AB, Harrold CL, Rezaei Javan R, van Tonder AJ, McDonnell AJ, Edwards BA (2017). Pneumococcal prophages are diverse, but not without structure or history. Sci Rep 7:42976
  • Rezaei Javan R, van Tonder AJ, King JP, Harrold CL, Brueggemann AB (2018). Genome Sequencing Reveals a Large and Diverse Repertoire of Antimicrobial Peptides. Front Microbiol 9:2012

Sequence bin

contigs
16
total length
2,114,952 bp
max length
438,486 bp
mean length
132,185 bp
N50 contig number
3
N50 length (L50)
328,547
N90 contig number
8
N90 length (L90)
95,345
N95 contig number
9
N95 length (L95)
63,661
loci tagged
1,388
detailed breakdown
Display

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Sp_cgc_1000cgMLSTSingle-linkage1000experimentalgroup: 7 (4508 isolates)
Sp_cgc_500cgMLSTSingle-linkage500experimentalgroup: 7 (446 isolates)
Sp_cgc_400cgMLSTSingle-linkage400experimentalgroup: 7 (446 isolates)
Sp_cgc_300cgMLSTSingle-linkage300experimentalgroup: 7 (446 isolates)
Sp_cgc_200cgMLSTSingle-linkage200experimentalgroup: 242 (440 isolates)
Sp_cgc_100cgMLSTSingle-linkage100experimentalgroup: 7 (49 isolates)
Sp_cgc_50cgMLSTSingle-linkage50experimentalgroup: 7 (3 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

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